BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947531
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41810.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1386 0.0
> AT5G41810.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G64340.1);
Has 876 Blast hits to 690 proteins in 132 species: Archae
- 0; Bacteria - 38; Metazoa - 180; Fungi - 112; Plants - 59;
Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). |
chr5:16738067-16739663 FORWARD LENGTH=1291
Length=1291
Score = 1386 bits (750), Expect = 0.0
Identities = 865/919 (94%), Gaps = 13/919 (1%)
Strand=Plus/Plus
Query 1 TTTGGTACGAAAATATAAAGATGGAGATCAAAGTCAAACCAAAAGCCGTAGAGTCTACGA 60
||||||||||||||| |||||||||||||||||||||| |||||| |||||||| || |
Sbjct 216 TTTGGTACGAAAATACAAAGATGGAGATCAAAGTCAAAGCAAAAGATGTAGAGTCGACAA 275
Query 61 TGATGGCAACTAAAGAGGAGGATGAGATCAAGAAGATGAAAGAGTGTGTGGTGATTGGTC 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 276 TGATGTCAACTAAAGAGGAGGATGAGATCAAGAAGATGAAAGAGTGTGTGGTGA-T--TC 332
Query 121 AAAAGGCAGATGAGGAGGTTAGTAGAGGACAAGAAACTATGAAGATCTTGGAGGGTTCAC 180
| ||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||
Sbjct 333 AGAAGGCAGATGAGGAGGTTACTAAAGGACAAGAAACTATGAAGATTTTGGATGGTTCAA 392
Query 181 GACAAAACCAAAATGAAACAAAACAAGATGATTTTAAGAATATTGACTCACCATCGTCAT 240
||||||||||| ||||||||| ||||| ||||| ||||||||||||||||||| ||||
Sbjct 393 GACAAAACCAAGATGAAACAAGACAAGCTGATTCTAAGAATATTGACTCACCA---TCAT 449
Query 241 CATCATCACTTGAGATGAAGAAGAAGGTGGAAATTGACAAAAAATTTACGAGTCATAACG 300
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 450 CATCATCACTTGAGATGAAGAAGAAGTTGGAAATTGACCAAAAATTTACGAGTCAAAACG 509
Query 301 AAGAAAACACCAAAAAGGAAGAGGAGAAGAAGAAAGAGACTAATTACAATAATAATCTTT 360
|||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 510 AAGAAAACACCAAAAAGGAAGAGGAGAAGAAGAAAGAGAC-CA--ACAATAACAATCTTT 566
Query 361 CTAACATGAAGCATAAGAAGACAAGTCCACACGTATGGGACTGTGGGAGCACTCTCTACG 420
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 567 CTAACATGAAGCATAAGAAGACGAGTTCACACGTATGGGACTGTGGGAGCACTCTCTACG 626
Query 421 ACTCGTTCGAGCTAAACTCGTTCAAACGTCAACTCGACTCAGCCATCTCTGCTTCTTCCG 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 627 ACTCGTTCGAGCTCAACTCGTTCAAACGTCAACTCGACTCAGCCATCTCTGCTTCCTCCG 686
Query 481 CCAGAACTATGTCCATGTCTCACCTCCCCGACCGCCGTGTACCTTCTCTCAGCTCACTTT 540
|||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||
Sbjct 687 CCAGAACTATGTCCATGTCTCACCTCCCTGACCGCCGTATCCCTTCTCTCAGCTCACTTT 746
Query 541 CGCCGGAGTATTCTCCCCCTCTTCCTCCTCCACCGACAACTTCTTCTTCCTCCTCCGCCG 600
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 747 CGCCGGAGTACTCTCCTCCTCTTCCTCCTCCACCGACAACTTCTTCTTCCTCCTCCTCCG 806
Query 601 GTGGCAAGAAACACTCGAACAAGATCTCTCGTTCTCTACAGAGATTCTTGAAGTCAGTGT 660
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 807 GTGGAAAGAAACACTCGAACAAGATCTCTCGTTCTCTACAGAGATTCTTGAAGTCAATGT 866
Query 661 TCAAACCTAAACAACACCAAAGCTTAAGCACTCCTTCTTCGCCGGTCTACAAGGCGGTGG 720
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 867 TCAAACCTAAACAGCACCAAAGCTTAACCACTCCTTCTTCGCCGGTCTACAAGGCGGTGG 926
Query 721 GTCACGGCGGTGGCGATAAAGATAGATACTACGTTGTTTATGACAAGA-CGGGTTCGTTG 779
||||||||||||||||||||||| |||||||||| ||||| ||||| | |||||||||||
Sbjct 927 GTCACGGCGGTGGCGATAAAGATCGATACTACGTCGTTTACGACAA-ATCGGGTTCGTTG 985
Query 780 ACAACTATTCCAGAGTCAACGGAGAAGGAAGTGAGCCCCGAGATCAACTCTCTTGTTAGG 839
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 986 ACAACTATTCCAGAGTCAACGGAGAAAGAAGTGAGCCCCGAGATCAACTCTCTTGTTAGG 1045
Query 840 AAGACCGTGTCCGAGAGATTCCCGGCGAGTCGAGTCGTTGGTATTTCATGTGCATGATTA 899
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1046 AAGACCGTGTCCGAGAGATTCCCGGCGAGTAGAGTCGTTGGTATTTCATGTGCATGATTA 1105
Query 900 TAATAT-ACATCTAAGTCG 917
|||||| | ||||||||||
Sbjct 1106 TAATATTA-ATCTAAGTCG 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5