BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947533

Length=484
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G37910.1 | Symbols:  | Protein with RING/U-box and TRAF-like...   169    3e-41


> AT5G37910.1 | Symbols:  | Protein with RING/U-box and TRAF-like 
domains | chr5:15096210-15097318 REVERSE LENGTH=831
Length=831

 Score =  169 bits (91),  Expect = 3e-41
 Identities = 155/185 (84%), Gaps = 8/185 (4%)
 Strand=Plus/Plus

Query  105  GCTGGAT-TTGTATGTACTCGATTGTCCTGTTTGCTGCG-AGCCACTCACTATTCATACC  162
            ||| ||| ||| || | |||||||||||| ||||||| | || || | || | || || |
Sbjct  90   GCTAGATCTTG-ATATCCTCGATTGTCCTATTTGCTGTGAAG-CATTGACGAGTCCTATC  147

Query  163  TTCCAGTGTGATAATGGGCACTTGGCTTGCTCTTCTTGCTGTCCCAAACTGAGTAATAAG  222
            |||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||
Sbjct  148  TTCCAGTGTGATAATGGGCATTTGGCTTGCGGTTCTTGCTGTCCCAAACTGAGTAATAAG  207

Query  223  TGCCCTGCATGTTCTTTGCCTATTGGAAACAATCG-ATGT-GTAGCAATGGAGAGGGTTC  280
            |||||||||||| |||||||| ||||  ||| ||| | |  | |||||||||||| ||||
Sbjct  208  TGCCCTGCATGTACTTTGCCTGTTGGTCACAGTCGCA-GCAG-AGCAATGGAGAGTGTTC  265

Query  281  ATGAA  285
             ||||
Sbjct  266  TTGAA  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23057473473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5