BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947538
Length=790
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00232.1 | Symbols: | DNA-binding storekeeper protein-relat... 320 1e-86
AT5G41765.1 | Symbols: | DNA-binding storekeeper protein-relat... 178 8e-44
> AT4G00232.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr4:100257-100721 REVERSE
LENGTH=465
Length=465
Score = 320 bits (173), Expect = 1e-86
Identities = 320/390 (82%), Gaps = 13/390 (3%)
Strand=Plus/Plus
Query 133 AAG-ACGTGAGTGCCAAGCGATCGAAGAAAGATGCGAAGAAGGCGAGTTCTCTAAA-GTT 190
||| ||||||||||||| | ||| ||||||||||| || |||| || ||||| ||| |||
Sbjct 76 AAGAACGTGAGTGCCAAACAATCAAAGAAAGATGCAAAAAAGGAGAATTCTC-AAATGTT 134
Query 191 GGAGTGGAGTGAGGAAGAAGAGATCCGTGTGCTACAAGGTATGACAGATTTCAAAGCTAT 250
|||||||| | |||| ||| ||| |||||||||||||||| ||||||||| || |
Sbjct 135 AAAGTGGAGTTCGAAAGATGAGGTCCTTGTGCTACAAGGTATGTTGGATTTCAAATCTGT 194
Query 251 AACAAGG-AAGAATCCTTTTGATGATATGAACGGAGCTTACGAATTC--C-TCCAGGAAT 306
||| ||| ||||||||| |||||||||| |||||||| ||||||||| | |||| ||||
Sbjct 195 AAC-AGGTAAGAATCCTGTTGATGATATAAACGGAGCATACGAATTCGTCGTCCATGAAT 253
Query 307 ATATAAGCGTTGATGTT-A--ACGACTTCGTAGAGAAGATGAAGAGTTTGAAGAAGAAGT 363
| |||||| || | || | | |||||| |||||||||||||||||||||||||||| |
Sbjct 254 ACATAAGCACTGTTATTGACGAAGACTTCATAGAGAAGATGAAGAGTTTGAAGAAGAAAT 313
Query 364 TAATGGGTCAAGTGAAGATTAACGCTAAAGAACCGTCTTCCTCGGAACCTC-ACGGCCAC 422
||| | || || |||| ||| |||||| |||||||| |||||||||| | |||
Sbjct 314 TAAAGAAAAAACAGAGGATTTACGATAAAGATCCGTCTTCTTCGGAACCTCTATA-CCAG 372
Query 423 ACAAGTTCTGAGTTGTTGAGACTGATTTGGGGATGTGATGTGGAATCTGCTGTTGAGAAA 482
| |||||| |||| ||||| | |||||||||| | ||||||||||||||| ||||||||
Sbjct 373 AAAAGTTCCGAGTGGTTGAAAATGATTTGGGGTTATGATGTGGAATCTGCCCTTGAGAAA 432
Query 483 CCAAGGAAGAGTAAGAGGATTATAAAGCTT 512
||||||||||||||| ||||||||||||||
Sbjct 433 CCAAGGAAGAGTAAGCGGATTATAAAGCTT 462
> AT5G41765.1 | Symbols: | DNA-binding storekeeper protein-related
transcriptional regulator | chr5:16716552-16717064 REVERSE
LENGTH=459
Length=459
Score = 178 bits (96), Expect = 8e-44
Identities = 209/259 (81%), Gaps = 25/259 (10%)
Strand=Plus/Plus
Query 229 GTATGACAGATTTCAAAGCTATAACAAGGAAGAATCCTTTTGATGATATGAACGGAGCTT 288
|||||| |||||||||||| |||||||| | ||||||| ||||||||||| ||||||||
Sbjct 128 GTATGATGGATTTCAAAGCTCTAACAAGGCATAATCCTTCTGATGATATGACCGGAGCTT 187
Query 289 ACGAA-TTCCTCCAGGAATATATAAGCGTTGATG-TTA-A-C---GACTTCGTAGAGAAG 341
|| || |||||||| ||||||||||||||||| | ||| | | || ||||||||||||
Sbjct 188 AC-AACTTCCTCCATGAATATATAAGCGTTGACGTTTATAGCTATGAGTTCGTAGAGAAG 246
Query 342 ATGAAGAGTTTGAAGAAGAAGTTAATGG-GTCAAGTGAAGATTAACGCTAAAGAACCGTC 400
|||||||||||||||||||| ||||| | | || || ||||||||||||||| | |||
Sbjct 247 ATGAAGAGTTTGAAGAAGAAATTAATAGAGAAAA-TGGGGATTAACGCTAAAGATCTGTC 305
Query 401 TTCCTCGGAACCTCACGGCCACACAAGTTCTGAGTTGTTGAGACTGATTTGGGGATGTGA 460
||| ||| | || || |||||||||||| | |||||||||| ||| |||
Sbjct 306 TTCTTCG-A---TC--GG---------TTCTGAGTTGTTAAAACTGATTTGGAGATATGA 350
Query 461 TGTGGAATCTGCTGTTGAG 479
|||| |||||| |||||||
Sbjct 351 TGTGAAATCTGTTGTTGAG 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38429122455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5