BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947539
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49645.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 963 0.0
> AT3G49645.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18403002-18404788
REVERSE LENGTH=892
Length=892
Score = 963 bits (521), Expect = 0.0
Identities = 652/713 (91%), Gaps = 17/713 (2%)
Strand=Plus/Plus
Query 23 TGAAAGACGAAGACAGGGAAGCGAGAATCGAACAGAAGAAGAAAATATCCGAGATTTTCA 82
|||||||||| |||| |||| ||||||| |||| |||||||||||| |||||||||||||
Sbjct 89 TGAAAGACGAGGACATGGAAACGAGAATAGAACTGAAGAAGAAAATTTCCGAGATTTTCA 148
Query 83 AAGATTTTATGACAGGAATCACACAGCTTGAGGAACTAGGGAATGCTGCAAACAACTTTC 142
|||| |||||||||| |||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 149 AAGACTTTATGACAGTAATCACGCAGCTTGAAGAACTAGGGAATGCTGCAAACAACTTTC 208
Query 143 TTCTTCGGTTTCAGCAAGGACTAAGTTTTCTTCAACGCCCTCCAATGGTTACTTCGTCTA 202
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 209 TTCTACGGTTTCAGCAAGGACTAAGTTTTCTTCAACGCCCTCCAATAGTTACTTCGTCCA 268
Query 203 AGTTGATGGAGAACATTATCAAGAAGAATGAAACAAGACGGCTTAAATCATATATGGAAG 262
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 269 AGTTGATTGAGAACATTATCAAGAAGAATGAAACAAGGCGGCTTAAATCATATATCGAGG 328
Query 263 CGGGATGTATTAACATCCACGATGCTGCACAAAGTACAAGAGCTTTGCATACATCCCTAT 322
| ||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 329 CAGGATGTATTAATATCCATGATGCTGCACAAAGCACAAGAGCTTTGCATACATCTCTAT 388
Query 323 CTGGACTTTCTGACCACCTAATCAAAGCCAAAAGCTTGTTAATTGAGCTTGAGCGTCTCA 382
| ||||||||||||||||||||||||||||||| |||||| |||||||| || |||||||
Sbjct 389 CAGGACTTTCTGACCACCTAATCAAAGCCAAAAACTTGTTGATTGAGCTGGAACGTCTCA 448
Query 383 CCGATGAAGCAGCCCTTGCCATTGAGACTGCCACACAGTTTTCCGTACAGCTAGATAAAT 442
| ||||| || |||||||| |||||| ||||||||||| | || | | ||||
Sbjct 449 CTGATGAGGCCGCCCTTGCAATTGAGTCTGCCACACAG----C--TA--G--A--TAAAG 496
Query 443 ACTCAAGTGATGAATTGCAACAAGTAACGTGTGATGAGGAGAACGAGACTGCACAATTAC 502
|||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 497 ACTCAAGTGATGGATTGCAACAAGTAACATGTGATGAGGAGAACGAGACTGTACAATTAC 556
Query 503 CTCAAGGACCTGAAGTT-CTAGAGTACGCTGCACTTATCGCAGTTATTTACAGTATGATG 561
||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 557 CTCAAGGACCTGAAGTTAC-AGAGTACGCTGCACTTATTGCAGTTATTTACAGTATGATG 615
Query 562 AAGCAGAACTATGCGATGCAGGAAAAGATTGTGAGATCGCTTAGTTTGAAGTCATCATCT 621
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 616 AAGCAGAACTATGTTATGCAGGATAAGATTGTGAGATCGCTTAGTTTGAAGTCATCATCT 675
Query 622 GGTGAGCTAGAGAGTTACAGTCTGATGTGGTCATTGCGTCCGTTTGTAGAAGATGAGATT 681
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 676 GGTGAGCTAGAGACTTACAGTCTGATGTGGTCATTGCGCCCGTTTGTAGAAGATGAGATT 735
Query 682 GTGAACAGTGCATGGAAATGGATTTACTAAAAATA-T-TTT-CATCCAATTTT 731
|||||||| |||||||||||||| ||||||||||| | ||| |||||||||||
Sbjct 736 GTGAACAGAGCATGGAAATGGATATACTAAAAATACTATTTTCATCCAATTTT 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35515541929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5