BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947541
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41760.1 | Symbols: | Nucleotide-sugar transporter family p... 1714 0.0
AT4G35335.1 | Symbols: | Nucleotide-sugar transporter family p... 82.4 8e-15
> AT5G41760.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr5:16706880-16709484 FORWARD LENGTH=1401
Length=1401
Score = 1714 bits (928), Expect = 0.0
Identities = 1011/1052 (96%), Gaps = 2/1052 (0%)
Strand=Plus/Plus
Query 15 GAACATTAATGGCGGCTACTCCGTGGTACTTTGTCGCAGTACTTCTCACCATTCTCACCA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 91 GAACATTAATGGCGGCTACTCCGTGGTACTTTGTCGCAGTACTTCTCACCATTCTTACCA 150
Query 75 GTTCTCAGGGGATTTTAACAACTCTTTCTCAAAGCAATGGAGGTTACAAGTATGATTATG 134
| |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 151 GCTCTCAGGGGATTCTAACAACTCTTTCTCAAAGTGATGGAGGTTATAAGTATGATTATG 210
Query 135 CTACTGTTCCCTTTCTTGCTGAAGTTTTTAAGCTGAT-AGTCTCTGGTTTATTTCTCTGG 193
||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 211 CTACTGTTCCCTTTCTTGCTGAAGTTTTTAAGCTGATCA-TTTCTGGTTTATTTCTCTGG 269
Query 194 AGAGAGATGCGGACATCTTCCTCAACAACTTCGAGGATTACTACGGATTGGAAGAGTGTG 253
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 270 AGAGAGATGCGGACATCTTCCTCAACAACTTCAAGGATTACTACGGATTGGAAGAGTGTG 329
Query 254 CGATTATTTGTTATTCCTTCTCTTATATACCTGATACATAACAATGTGCAGTTTGCTACA 313
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 330 CGATTATTTGTTATTCCGTCTCTTATTTATCTGATACATAACAATGTGCAGTTTGCTACA 389
Query 314 TTGACTTATGTAGACACATCCACTTATCAGATAATGGGTAATTTGAAGATTGTGACCACT 373
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TTGACTTATGTGGATACGTCCACTTATCAGATAATGGGTAATTTGAAGATTGTGACCACT 449
Query 374 GGTATACTCTTCAGGTTGTTTTTGAAAAGGAAACTATCTAAACTTCAGTGGATGGCAATT 433
|| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 GGCATACTGTTTAGGTTATTTTTGAAAAGGAAACTATCTAAACTTCAGTGGATGGCAATT 509
Query 434 GGTCTTTTAGCTGTTGGAACAACTACCAGCCAGGTTAAGGGTTGCGGAGAAGCTTCATGT 493
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 510 GGTCTTTTAGCTGTTGGAACAACTACCAGCCAGGTTAAGGGTTGTGGAGAAGCTTCTTGT 569
Query 494 GATTCTTTATTCACGGCACCAATACAAGGTTATTTGCTGGGCATCCTCTCAGCTGGTTTG 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GATTCTTTATTCACGGCACCAATACAAGGTTATTTGCTGGGCATCCTCTCAGCTGGTTTG 629
Query 554 TCTGCGCTAGCCGGAATCTACACAGAGTTTCTGATGAAGAGAAACAACGACACCTTATAC 613
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 630 TCCGCGCTAGCTGGAATCTACACAGAGTTTCTGATGAAGAGAAACAATGACACCTTATAC 689
Query 614 TGGCAAAACTTGCAATTGTATACGTTTGGTTCACTTTTCAACGTTGCCCGACTTATAGCA 673
|||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct 690 TGGCAAAACTTGCAGTTATATACGTTTGGTTCACTTTTCAACGTAGCTCGACTTATAGCA 749
Query 674 GATGATTTCAGACACGGGTTTGAAAAGGGTCCTTGGTGGCAACGTATCTTTGATGGGTAC 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 750 GATGATTTCAGACACGGGTTTGAAAAGGGTCCTTGGTGGCAACGTATCTTTGATGGGTAC 809
Query 734 AGCATCACCACTTGGATGGTAGTTCTGAATCTCGGATCCACCGGCTTACTGGTGTCGTGG 793
||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 810 AGCATCACCACTTGGCTGGTAGTTCTGAATCTCGGATCCACTGGCTTACTGGTCTCGTGG 869
Query 794 TTAATGAAGTATGCAGACAATATCGTGAAGGTTTATTCTACATCAATGGCAATGCTACTT 853
|||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 870 TTAATGAAGTATGCAGACAACATCGTCAAGGTTTATTCTACATCAATGGCGATGCTACTT 929
Query 854 ACTATGGTTGCATCCATATACCTCTTCAGCTTCAAACCAACACTGCAGCTTTTCTTGGGT 913
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 930 ACTATGGTTGCATCCATATACCTTTTTAGCTTCAAACCGACACTGCAGCTTTTCTTGGGT 989
Query 914 ATTGTCATATGCATCATGTCACTTCATATGTACTTTGCTCCTCCACACACGCTCGTGGAC 973
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 990 ATTGTCATATGCATCATGTCACTCCATATGTACTTTGCTCCTCCACACACGCTCGTGGAC 1049
Query 974 TTGCCAGTGACAAACGAAGCACATGCCAAGACCTTAAAGCAAGTTGTCGTAGAAGAAAAG 1033
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 TTGCCCGTGACAAACGAAGCACATGCCAAGACCTTAAAGCAAGTTGTCGTAGAAGAAAAG 1109
Query 1034 ACAGATTCTTGAATCAAATTGGACGAAAAGGT 1065
|||||||||||||| |||||||||||||||||
Sbjct 1110 ACAGATTCTTGAATTAAATTGGACGAAAAGGT 1141
> AT4G35335.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr4:16807265-16810216 FORWARD LENGTH=1281
Length=1281
Score = 82.4 bits (44), Expect = 8e-15
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 785 GTGTCG-TGGTTAATGAAGTATGCAGACAATATCGTGAAGGTTTATTCTACATCAATGGC 843
|||||| ||| | ||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 898 GTGTCGATGG-TGATGAAATATGCAGACAATATCGTGAAGGTTTATTCGACATCAGTGGC 956
Query 844 AATGCT 849
|||||
Sbjct 957 GATGCT 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5