BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947558
Length=2476
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41610.1 | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18 ... 3941 0.0
AT5G41612.1 | Symbols: | other RNA | chr5:16638579-16639863 FO... 985 0.0
AT4G14810.1 | Symbols: | unknown protein; Has 30201 Blast hits... 137 4e-31
> AT5G41610.1 | Symbols: ATCHX18, CHX18 | cation/H+ exchanger 18
| chr5:16638370-16641728 REVERSE LENGTH=2837
Length=2837
Score = 3941 bits (2134), Expect = 0.0
Identities = 2370/2485 (95%), Gaps = 12/2485 (0%)
Strand=Plus/Plus
Query 1 ACAAGGTTTAGTCTGCAAGAATGGCTACTAATTCTACCAAAGCTTGTCCTGCTCCGATGA 60
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 201 ACAAGGTTTAGTCTGCAAGGATGGCTACAAATTCTACAAAAGCTTGTCCTGCTCCGATGA 260
Query 61 AAGCAACCTCTAATGGAGTTTTCCAAGGAGATAACCCTATAGACTTTGCGTTACCTCTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 AAGCAACCTCTAATGGAGTTTTCCAAGGAGATAACCCTATAGACTTTGCGTTACCTCTTG 320
Query 121 CGATTCTGCAGATAGTCATTGTTATTGTTCTCACTCGTGTTCTTGCTTACATTTTAAGAC 180
|||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||
Sbjct 321 CGATTCTGCAGATAGTTATTGTTATAGTTCTCACTCGTGTTCTTGCTTACCTTTTAAGAC 380
Query 181 CTTTGAGGCAGCCTCGTGTTATTGCTGAAGTTATTGGTGGGATTATGCTTGGACCTTCTC 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 CTTTGAGACAGCCTCGTGTTATTGCTGAAGTTATTGGTGGGATTATGCTTGGACCTTCTC 440
Query 241 TTCTTGGTCGTTCCAAGGTC-TTTCTTGACGCTGTGTTCCCGAAGAAAAGTTTGACTGTT 299
|||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||
Sbjct 441 TTCTTGGTCGTTCCAAGG-CTTTTCTAGACGCTGTGTTCCCGAAGAAAAGCTTGACTGTT 499
Query 300 CTAGAAACTTTGGCTAATCTCGGCCTTCTCTTCTTCCTGTTCCTTGCCGGTCTAGAGATT 359
|| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 500 CTTGAAACTCTGGCTAATCTCGGCCTTCTCTTCTTCCTTTTCCTTGCTGGTCTAGAGATT 559
Query 360 GATACCAAAGCCCTTCGTCACACCGGGAAAAAGGCTTTGGGAATTGCCCTGGCTGGAATA 419
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 560 GATACCAAAGCCCTTCGTCGCACCGGGAAAAAGGCTTTGGGAATTGCCTTGGCTGGAATA 619
Query 420 ACCCTCCCGTTTGCTCTTGGCATTGGTACTTCATTCGTTTTAAAGGCAACAATCTCCAAA 479
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 620 ACCCTCCCGTTTGCTCTTGGCATTGGTTCTTCATTCGTTTTAAAAGCAACAATCTCCAAA 679
Query 480 GGAGTGGATAGTACTGCGTTTCTCGTCTTCATGGGTGTGGCACTCTCCATCACTGCATTC 539
|||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 680 GGAGTGAATAGTACCGCGTTTCTCGTCTTCATGGGTGTGGCACTCTCTATCACTGCATTC 739
Query 540 CCTGTGTTGGCCCGTATCTTAGCTGAGCTAAAGCTTCTAACTACTGAAATAGGACGACTT 599
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 740 CCTGTGTTGGCCCGTATCTTAGCGGAGCTAAAGCTTCTAACTACTGAGATAGGACGACTT 799
Query 600 GCTATGTCCGCAGCTGCTGTTAACGATGTGGCAGCTTGGATTCTCCTTGCTCTAGCCATC 659
|||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 800 GCTATGTCGGCAGCTGCCGTTAACGATGTGGCAGCTTGGATTCTACTTGCTCTAGCCATT 859
Query 660 GCTCTCTCGGGATCCAATACCTCTCCCCTTGTCTCTCTCTGGGTTTTCCTTTCCGGTTGC 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 860 GCTCTCTCGGGATCCAATACCTCTCCCCTTGTCTCTCTCTGGGTTTTCCTTTCCGGGTGT 919
Query 720 GCTTTTGTCATCGGTGCTG-CTTTCATCATTCCGCCAATATTTAGATGGATTGCCCGGAG 778
|||||||| |||||||| | ||||||||||||| ||||| |||||||||||| |||||||
Sbjct 920 GCTTTTGTTATCGGTGC-GTCTTTCATCATTCCACCAATCTTTAGATGGATTTCCCGGAG 978
Query 779 GTGCCACGAGGGAGAACCTATCGAAGAAACCTACATCTGTGCCACTTTGGCTGTAGTTCT 838
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 979 GTGCCACGAGGGAGAACCTATCGAGGAAACCTACATCTGTGCCACTTTGGCTGTAGTTCT 1038
Query 839 TGTTTGTGGATTCATTACTGATGCCATTGGAATCCATTCCATGTTTGGTGCCTTTGTGGT 898
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1039 TGTTTGTGGATTCATAACTGATGCCATTGGAATCCACTCCATGTTTGGTGCCTTTGTGGT 1098
Query 899 GGGTGTTTTGATCCCAAAGGAAGGACCTTTTGCTGGTGCACTCGTTGAGAAGGTGGAAGA 958
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1099 GGGTGTTTTGATTCCAAAGGAAGGACCTTTTGCTGGTGCACTAGTTGAGAAGGTGGAAGA 1158
Query 959 TCTTGTATCCGGTCTCTTCCTGCCGCTTTACTTTGTGGCAAGTGGTCTGAAAACTAATGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TCTTGTATCCGGTCTCTTCCTGCCGCTTTACTTTGTGGCAAGTGGTCTGAAAACTAATGT 1218
Query 1019 GGCCACGATTCAAGGAGCTCAGTCTTGGGGTCTTCTGGTTTTAGTCACCGCCACAGCTTG 1078
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 GGCAACGATCCAAGGAGCTCAGTCTTGGGGTCTTCTGGTTTTAGTCACCGCCACAGCTTG 1278
Query 1079 TTTCGGTAAGATATTGGGCACTCTCGGTGTTTCCCTCGCCTTCAAGATACCTATGCGAGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 TTTCGGTAAGATATTGGGCACTCTCGGTGTTTCCCTCGCCTTCAAGATACCTATGCGAGA 1338
Query 1139 AGCAATAACATTAGGATTCCTCATGAACACTAAGGGATTGGTCGAACTCATCGTCCTCAA 1198
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1339 AGCAATAACATTAGGATTCCTCATGAACACTAAAGGATTGGTCGAACTCATCGTCCTCAA 1398
Query 1199 CATCGGAAAAGATCGAAAGGTTCTTAATGATCAGACATTTGCCATAATGGTTCTAATGGC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 CATCGGAAAAGATCGAAAGGTTCTTAATGATCAGACATTTGCCATAATGGTTCTAATGGC 1458
Query 1259 TCTGTTCACAACCTTCATCACCACACCAGTCGTAATGGCAGTCTACAAACCGGCTAGAAG 1318
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1459 TCTCTTCACAACCTTCATCACCACACCAGTCGTAATGGCAGTCTACAAACCAGCGAGAAG 1518
Query 1319 AGCAAAGAAAGAAGGAGAATACAAACACAGGACGGTAGAACGAGAGAACACAAACTCACA 1378
||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 1519 AGCGAAGAAAGAAGGAGAATACAAACACAGGGCAGTAGAACGAGAGAACACAAACACACA 1578
Query 1379 GCTTCGAATCCTCACATGTTTCCATGGCGCCGGAAGCATTCCTTCAATGATAAACCTCCT 1438
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1579 GCTTCGAATCCTCACATGTTTCCACGGAGCAGGAAGCATTCCTTCAATGATAAACCTCCT 1638
Query 1439 CGAAGCATCAAGAGGCATCGAAAAAGGCGAAGGACTGTGCGTATACGCTCTCCACTTACG 1498
|||||||||||||| ||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 1639 AGAAGCATCAAGAGGTATCGAAAAAGGCGAAGGGCTCTGCGTTTACGCTCTCCACTTACG 1698
Query 1499 AGAACTATCAGAGAGATCATCAGCTATTCTAATGGTTCATAAAGTTCGCAAAAACGGAAT 1558
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1699 GGAACTATCAGAGAGATCATCAGCTATTCTAATGGTTCATAAAGTTCGGAAAAACGGAAT 1758
Query 1559 GCCATTTTGGAACCGCAGAGGTGTCAACGCACACGCAGATCAAGTAGTAGTTGCTTTCCA 1618
||| ||||||||| | ||||| || |||||| |||| |||||||||||||||||||||||
Sbjct 1759 GCCGTTTTGGAACAGAAGAGGAGTAAACGCAGACGCTGATCAAGTAGTAGTTGCTTTCCA 1818
Query 1619 AGCTTTTCAACAACTAAGCAGAGTCAATATCCGACCAATGACAGCAATCTCTTCAATGTC 1678
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1819 AGCTTTTCAACAGCTAAGCAGAGTCAATGTCCGACCAATGACAGCAATCTCTTCAATGTC 1878
Query 1679 TGATATTCATGAAGATATCTGCACAACAGCTGCAAGaaaaaaaGCTGCCATTGTGATTCT 1738
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1879 TGATATTCATGAAGATATCTGCACAACAGCTGTAAGAAAAAAAGCAGCCATTGTGATTCT 1938
Query 1739 TCCGTTTCACAAGCATCAACAGCTCGATGGTTCGTTAGAGACTACACGTGGCGATTACCG 1798
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1939 TCCGTTTCACAAGCATCAACAGCTTGATGGTTCGTTAGAGACTACACGTGGCGATTACCG 1998
Query 1799 TTGGGTTAACCGGAGAGTTTTGCTTGAAGCTCCTTGTTCAGTTGGTATATTCGTTGACCG 1858
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1999 TTGGGTTAACCGGAGAGTTTTGCTTCAAGCTCCTTGTTCGGTTGGTATATTCGTTGACCG 2058
Query 1859 TGGACTCGGTGGTTCGAGTCAAGTCTCAGCTCAAGATGTTTCTTACTCTGTTGTTGTTCT 1918
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2059 TGGACTCGGAGGTTCAAGTCAAGTCTCAGCTCAAGATGTTTCTTACTCTGTTGTTGTTCT 2118
Query 1919 GTTCTTCGGTGGTCGTGATGATCGTGAAGCATTGGCTTATGGATTACGTATGGCGGAGCA 1978
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2119 GTTCTTCGGTGGTCCTGATGATCGTGAAGCGTTGGCTTATGGATTACGTATGGCGGAGCA 2178
Query 1979 TCCCGGAATTACTTTGACGGTTTTCCGATTTGTGGTATCGCCGGAGAGAGTCGGAGAGAT 2038
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 TCCCGGAATTGTTTTGACTGTTTTCCGATTTGTGGTATCGCCGGAGAGAGTCGGAGAGAT 2238
Query 2039 TGTTAACGTTGAAGTGAGTAACACTAACAACGAGAGTCAGAGTGTGAAGAATCTGAAATC 2098
|||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 2239 TGTTAATGTTGAAGTGAGTAACAATAACAACGAGAATCAGAGTGTGAAGAATCTGAAATC 2298
Query 2099 GGATGAGGAGATTATATCTGAGATAAAGAAGATATCGTCGGTGGAGGAATCGGTTAAGTT 2158
||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct 2299 GGATGAGGAGATTATGTCTGAGATAAGGAAGATATCTTCGGTGGACGAATCGGTTAAGTT 2358
Query 2159 CGTGGAGAAACGGATTGAAAACGCCGCCGCGGATGTTAGATCGGCGATTGAGGAAGTACG 2218
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 2359 CGTGGAGAAACAGATTGAAAACGCCGCCGTGGATGTTAGATCGGCGATTGAGGAAGTGCG 2418
Query 2219 GCGGAGCAATTTGTTTTTGGTTGGTCGAATGCCAGGTGGCGAAATAGCATTGGCGATTAG 2278
||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct 2419 GCGGAGCAATTTGTTTTTGGTTGGTAGAATGCCAGGTGGAGAAATTGCATTGGCGATTAG 2478
Query 2279 GGAAAACAGTGAATGTCCGGAGCTTGGACCTGTCGGAAGTTTATTGATTTCGCCGGAATC 2338
||| || |||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 2479 GGAGAATAGTGAATGTCCGGAGCTTGGACCTGTAGGAAGCTTGTTGATTTCGCCGGAATC 2538
Query 2339 TTCGACAAAAGCATCGGTTTTGGTGATTCAGCAGTATAACGGCACCGGAACAGCTCCGGA 2398
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 2539 TTCGACAAAAGCATCGGTTTTGGTGATTCAGCAGTACAACGGCACCGGAATAGCTCCGGA 2598
Query 2399 TTTGGCTTCAGCTGGGACGGAGGTATTGACTTCAACGGATAAAGACTCTGATTGA--G-- 2454
||||| | | |||| |||||||||||||||||| ||||||||||||||||||||| |
Sbjct 2599 TTTGGGTGCGGCTGAGACGGAGGTATTGACTTCTACGGATAAAGACTCTGATTGAATGAA 2658
Query 2455 TCCATTGGTTAA---CAAGAACGGT 2476
|| ||||||||| ||||||||||
Sbjct 2659 TC-ATTGGTTAAAAACAAGAACGGT 2682
> AT5G41612.1 | Symbols: | other RNA | chr5:16638579-16639863
FORWARD LENGTH=1196
Length=1196
Score = 985 bits (533), Expect = 0.0
Identities = 599/632 (95%), Gaps = 0/632 (0%)
Strand=Plus/Minus
Query 1797 CGTTGGGTTAACCGGAGAGTTTTGCTTGAAGCTCCTTGTTCAGTTGGTATATTCGTTGAC 1856
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 632 CGTTGGGTTAACCGGAGAGTTTTGCTTCAAGCTCCTTGTTCGGTTGGTATATTCGTTGAC 573
Query 1857 CGTGGACTCGGTGGTTCGAGTCAAGTCTCAGCTCAAGATGTTTCTTACTCTGTTGTTGTT 1916
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 CGTGGACTCGGAGGTTCAAGTCAAGTCTCAGCTCAAGATGTTTCTTACTCTGTTGTTGTT 513
Query 1917 CTGTTCTTCGGTGGTCGTGATGATCGTGAAGCATTGGCTTATGGATTACGTATGGCGGAG 1976
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 512 CTGTTCTTCGGTGGTCCTGATGATCGTGAAGCGTTGGCTTATGGATTACGTATGGCGGAG 453
Query 1977 CATCCCGGAATTACTTTGACGGTTTTCCGATTTGTGGTATCGCCGGAGAGAGTCGGAGAG 2036
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 452 CATCCCGGAATTGTTTTGACTGTTTTCCGATTTGTGGTATCGCCGGAGAGAGTCGGAGAG 393
Query 2037 ATTGTTAACGTTGAAGTGAGTAACACTAACAACGAGAGTCAGAGTGTGAAGAATCTGAAA 2096
|||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 392 ATTGTTAATGTTGAAGTGAGTAACAATAACAACGAGAATCAGAGTGTGAAGAATCTGAAA 333
Query 2097 TCGGATGAGGAGATTATATCTGAGATAAAGAAGATATCGTCGGTGGAGGAATCGGTTAAG 2156
||||||||||||||||| |||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 332 TCGGATGAGGAGATTATGTCTGAGATAAGGAAGATATCTTCGGTGGACGAATCGGTTAAG 273
Query 2157 TTCGTGGAGAAACGGATTGAAAACGCCGCCGCGGATGTTAGATCGGCGATTGAGGAAGTA 2216
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 272 TTCGTGGAGAAACAGATTGAAAACGCCGCCGTGGATGTTAGATCGGCGATTGAGGAAGTG 213
Query 2217 CGGCGGAGCAATTTGTTTTTGGTTGGTCGAATGCCAGGTGGCGAAATAGCATTGGCGATT 2276
||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct 212 CGGCGGAGCAATTTGTTTTTGGTTGGTAGAATGCCAGGTGGAGAAATTGCATTGGCGATT 153
Query 2277 AGGGAAAACAGTGAATGTCCGGAGCTTGGACCTGTCGGAAGTTTATTGATTTCGCCGGAA 2336
||||| || |||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 152 AGGGAGAATAGTGAATGTCCGGAGCTTGGACCTGTAGGAAGCTTGTTGATTTCGCCGGAA 93
Query 2337 TCTTCGACAAAAGCATCGGTTTTGGTGATTCAGCAGTATAACGGCACCGGAACAGCTCCG 2396
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 92 TCTTCGACAAAAGCATCGGTTTTGGTGATTCAGCAGTACAACGGCACCGGAATAGCTCCG 33
Query 2397 GATTTGGCTTCAGCTGGGACGGAGGTATTGAC 2428
||||||| | | |||| |||||||||||||||
Sbjct 32 GATTTGGGTGCGGCTGAGACGGAGGTATTGAC 1
Score = 767 bits (415), Expect = 0.0
Identities = 467/493 (95%), Gaps = 0/493 (0%)
Strand=Plus/Minus
Query 1216 AGGTTCTTAATGATCAGACATTTGCCATAATGGTTCTAATGGCTCTGTTCACAACCTTCA 1275
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1124 AGGTTCTTAATGATCAGACATTTGCCATAATGGTTCTAATGGCTCTCTTCACAACCTTCA 1065
Query 1276 TCACCACACCAGTCGTAATGGCAGTCTACAAACCGGCTAGAAGAGCAAAGAAAGAAGGAG 1335
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1064 TCACCACACCAGTCGTAATGGCAGTCTACAAACCAGCGAGAAGAGCGAAGAAAGAAGGAG 1005
Query 1336 AATACAAACACAGGACGGTAGAACGAGAGAACACAAACTCACAGCTTCGAATCCTCACAT 1395
|||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1004 AATACAAACACAGGGCAGTAGAACGAGAGAACACAAACACACAGCTTCGAATCCTCACAT 945
Query 1396 GTTTCCATGGCGCCGGAAGCATTCCTTCAATGATAAACCTCCTCGAAGCATCAAGAGGCA 1455
||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 944 GTTTCCACGGAGCAGGAAGCATTCCTTCAATGATAAACCTCCTAGAAGCATCAAGAGGTA 885
Query 1456 TCGAAAAAGGCGAAGGACTGTGCGTATACGCTCTCCACTTACGAGAACTATCAGAGAGAT 1515
|||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 884 TCGAAAAAGGCGAAGGGCTCTGCGTTTACGCTCTCCACTTACGGGAACTATCAGAGAGAT 825
Query 1516 CATCAGCTATTCTAATGGTTCATAAAGTTCGCAAAAACGGAATGCCATTTTGGAACCGCA 1575
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |
Sbjct 824 CATCAGCTATTCTAATGGTTCATAAAGTTCGGAAAAACGGAATGCCGTTTTGGAACAGAA 765
Query 1576 GAGGTGTCAACGCACACGCAGATCAAGTAGTAGTTGCTTTCCAAGCTTTTCAACAACTAA 1635
|||| || |||||| |||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 764 GAGGAGTAAACGCAGACGCTGATCAAGTAGTAGTTGCTTTCCAAGCTTTTCAACAGCTAA 705
Query 1636 GCAGAGTCAATATCCGACCAATGACAGCAATCTCTTCAATGTCTGATATTCATGAAGATA 1695
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 GCAGAGTCAATGTCCGACCAATGACAGCAATCTCTTCAATGTCTGATATTCATGAAGATA 645
Query 1696 TCTGCACAACAGC 1708
|||||||||||||
Sbjct 644 TCTGCACAACAGC 632
> AT4G14810.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:8504145-8504509
FORWARD LENGTH=261
Length=261
Score = 137 bits (74), Expect = 4e-31
Identities = 125/148 (84%), Gaps = 9/148 (6%)
Strand=Plus/Plus
Query 1845 ATATTCGTTGACCGTGGACTCGGTGGTTCGAGTCAAGTCTCAGCTCA-A-GATGTTTCTT 1902
||||||||||||||||||||||||||||||||| |||| || | ||| | ||||||| ||
Sbjct 102 ATATTCGTTGACCGTGGACTCGGTGGTTCGAGTTAAGTTTC-G-TCAGAAGATGTTTTTT 159
Query 1903 ACTCTGTTGTTGTTCTGTTCTTCGGTGGTCGTGATGATCGTGAAGCATTGGCT--TA-TG 1959
|| ||| || ||| |||| |||||||||||||| |||||||||| |||||| || ||
Sbjct 160 -CT-TGTCGTGGTTTTGTTTTTCGGTGGTCGTGAAGATCGTGAAGTGTTGGCTAATAATG 217
Query 1960 GATTACGTATGGCGGAGCATCCCGGAAT 1987
| |||||||||| ||||||| ||||||
Sbjct 218 GTTTACGTATGGTGGAGCATATCGGAAT 245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122858843407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5