BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947559 Length=205 Score E Sequences producing significant alignments: (Bits) Value AT5G41605.1 | Symbols: | pre-tRNA | chr5:16638166-16638249 FOR... 150 4e-36 AT4G11216.1 | Symbols: | pre-tRNA | chr4:6837774-6837857 REVER... 150 4e-36 AT1G20040.1 | Symbols: | pre-tRNA | chr1:6948860-6948943 REVER... 150 4e-36 AT4G25640.2 | Symbols: DTX35 | detoxifying efflux carrier 35 | ... 147 5e-35 AT4G25635.1 | Symbols: | pre-tRNA | chr4:13076574-13076657 REV... 145 2e-34 AT5G52495.1 | Symbols: | pre-tRNA | chr5:21300880-21300963 REV... 139 9e-33 AT5G25585.1 | Symbols: | pre-tRNA | chr5:8906416-8906499 FORWA... 139 9e-33 AT4G23635.1 | Symbols: | pre-tRNA | chr4:12320110-12320193 FOR... 139 9e-33 AT1G64120.1 | Symbols: | pre-tRNA | chr1:23802553-23802636 FOR... 134 4e-31 AT4G11213.1 | Symbols: | pre-tRNA | chr4:6837560-6837643 REVER... 122 9e-28 AT5G07625.1 | Symbols: | pre-tRNA | chr5:2411148-2411231 FORWA... 117 4e-26 AT5G09345.1 | Symbols: | pre-tRNA | chr5:2898867-2898950 REVER... 117 4e-26 AT1G64130.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 95.3 2e-19 AT4G23640.1 | Symbols: TRH1, ATKT3, KUP4 | Potassium transporte... 69.4 1e-11 AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-241... 56.5 9e-08 > AT5G41605.1 | Symbols: | pre-tRNA | chr5:16638166-16638249 FORWARD LENGTH=84 Length=84 Score = 150 bits (81), Expect = 4e-36 Identities = 83/84 (99%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60 Query 75 TGGGTTCAAACCCCACTTTTGACA 98 |||||||||||||||||| ||||| Sbjct 61 TGGGTTCAAACCCCACTTCTGACA 84 > AT4G11216.1 | Symbols: | pre-tRNA | chr4:6837774-6837857 REVERSE LENGTH=84 Length=84 Score = 150 bits (81), Expect = 4e-36 Identities = 83/84 (99%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60 Query 75 TGGGTTCAAACCCCACTTTTGACA 98 |||||||||||||||||| ||||| Sbjct 61 TGGGTTCAAACCCCACTTCTGACA 84 > AT1G20040.1 | Symbols: | pre-tRNA | chr1:6948860-6948943 REVERSE LENGTH=84 Length=84 Score = 150 bits (81), Expect = 4e-36 Identities = 83/84 (99%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60 Query 75 TGGGTTCAAACCCCACTTTTGACA 98 |||||||||||||||||| ||||| Sbjct 61 TGGGTTCAAACCCCACTTCTGACA 84 > AT4G25640.2 | Symbols: DTX35 | detoxifying efflux carrier 35 | chr4:13076444-13079048 REVERSE LENGTH=1760 Length=1760 Score = 147 bits (79), Expect = 5e-35 Identities = 83/85 (98%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1547 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 1606 Query 75 TGGGTTCAAACCCCACTTTTGACAT 99 |||||||||||||||||| |||||| Sbjct 1607 TGGGTTCAAACCCCACTTCTGACAT 1631 > AT4G25635.1 | Symbols: | pre-tRNA | chr4:13076574-13076657 REVERSE LENGTH=84 Length=84 Score = 145 bits (78), Expect = 2e-34 Identities = 82/84 (98%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 60 Query 75 TGGGTTCAAACCCCACTTTTGACA 98 |||||||||||||||||| ||||| Sbjct 61 TGGGTTCAAACCCCACTTCTGACA 84 > AT5G52495.1 | Symbols: | pre-tRNA | chr5:21300880-21300963 REVERSE LENGTH=84 Length=84 Score = 139 bits (75), Expect = 9e-33 Identities = 81/84 (96%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60 Query 75 TGGGTTCAAACCCCACTTTTGACA 98 |||||||||| ||||||| ||||| Sbjct 61 TGGGTTCAAATCCCACTTCTGACA 84 > AT5G25585.1 | Symbols: | pre-tRNA | chr5:8906416-8906499 FORWARD LENGTH=84 Length=84 Score = 139 bits (75), Expect = 9e-33 Identities = 81/84 (96%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60 Query 75 TGGGTTCAAACCCCACTTTTGACA 98 |||||||||| ||||||| ||||| Sbjct 61 TGGGTTCAAATCCCACTTCTGACA 84 > AT4G23635.1 | Symbols: | pre-tRNA | chr4:12320110-12320193 FORWARD LENGTH=84 Length=84 Score = 139 bits (75), Expect = 9e-33 Identities = 81/84 (96%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60 Query 75 TGGGTTCAAACCCCACTTTTGACA 98 |||||||||| ||||||| ||||| Sbjct 61 TGGGTTCAAATCCCACTTCTGACA 84 > AT1G64120.1 | Symbols: | pre-tRNA | chr1:23802553-23802636 FORWARD LENGTH=84 Length=84 Score = 134 bits (72), Expect = 4e-31 Identities = 80/84 (95%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 60 Query 75 TGGGTTCAAACCCCACTTTTGACA 98 |||||||||| ||||||| ||||| Sbjct 61 TGGGTTCAAATCCCACTTCTGACA 84 > AT4G11213.1 | Symbols: | pre-tRNA | chr4:6837560-6837643 REVERSE LENGTH=84 Length=84 Score = 122 bits (66), Expect = 9e-28 Identities = 78/84 (93%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74 ||||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||| Sbjct 1 GTCAGTATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGCG 60 Query 75 TGGGTTCAAACCCCACTTTTGACA 98 ||||||||||||||||| ||||| Sbjct 61 TGGGTTCAAACCCCACTGCTGACA 84 > AT5G07625.1 | Symbols: | pre-tRNA | chr5:2411148-2411231 FORWARD LENGTH=84 Length=84 Score = 117 bits (63), Expect = 4e-26 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTA-AGAGGGC 73 |||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 1 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCG-AGAGAGGGC 59 Query 74 GTGGGTTCAAACCCCACTTTTGACA 98 ||||||||||| ||||| | ||||| Sbjct 60 GTGGGTTCAAATCCCACATCTGACA 84 > AT5G09345.1 | Symbols: | pre-tRNA | chr5:2898867-2898950 REVERSE LENGTH=84 Length=84 Score = 117 bits (63), Expect = 4e-26 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTA-AGAGGGC 73 |||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||| Sbjct 1 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCG-AGAGAGGGC 59 Query 74 GTGGGTTCAAACCCCACTTTTGACA 98 ||||||||||| ||||| | ||||| Sbjct 60 GTGGGTTCAAATCCCACATCTGACA 84 > AT1G64130.1 | Symbols: | Polyketide cyclase/dehydrase and lipid transport superfamily protein | chr1:23802559-23803533 FORWARD LENGTH=348 Length=348 Score = 95.3 bits (51), Expect = 2e-19 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 21 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCGTGG 77 |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCGTGG 57 > AT4G23640.1 | Symbols: TRH1, ATKT3, KUP4 | Potassium transporter family protein | chr4:12320152-12324486 REVERSE LENGTH=2847 Length=2847 Score = 69.4 bits (37), Expect = 1e-11 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 57 GGTCCTCGTAAGAGGGCGTGGGTTCAAACCCCACTTTTGACAT 99 |||||||||||||||||||||||||||| ||||||| |||||| Sbjct 2847 GGTCCTCGTAAGAGGGCGTGGGTTCAAATCCCACTTCTGACAT 2805 > AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-2414711 FORWARD LENGTH=2024 Length=2024 Score = 56.5 bits (30), Expect = 9e-08 Identities = 30/30 (100%), Gaps = 0/30 (0%) Strand=Plus/Plus Query 22 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 51 |||||||||||||||||||||||||||||| Sbjct 164 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 193 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9154845882 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5