BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947559
Length=205
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41605.1 | Symbols: | pre-tRNA | chr5:16638166-16638249 FOR... 150 4e-36
AT4G11216.1 | Symbols: | pre-tRNA | chr4:6837774-6837857 REVER... 150 4e-36
AT1G20040.1 | Symbols: | pre-tRNA | chr1:6948860-6948943 REVER... 150 4e-36
AT4G25640.2 | Symbols: DTX35 | detoxifying efflux carrier 35 | ... 147 5e-35
AT4G25635.1 | Symbols: | pre-tRNA | chr4:13076574-13076657 REV... 145 2e-34
AT5G52495.1 | Symbols: | pre-tRNA | chr5:21300880-21300963 REV... 139 9e-33
AT5G25585.1 | Symbols: | pre-tRNA | chr5:8906416-8906499 FORWA... 139 9e-33
AT4G23635.1 | Symbols: | pre-tRNA | chr4:12320110-12320193 FOR... 139 9e-33
AT1G64120.1 | Symbols: | pre-tRNA | chr1:23802553-23802636 FOR... 134 4e-31
AT4G11213.1 | Symbols: | pre-tRNA | chr4:6837560-6837643 REVER... 122 9e-28
AT5G07625.1 | Symbols: | pre-tRNA | chr5:2411148-2411231 FORWA... 117 4e-26
AT5G09345.1 | Symbols: | pre-tRNA | chr5:2898867-2898950 REVER... 117 4e-26
AT1G64130.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 95.3 2e-19
AT4G23640.1 | Symbols: TRH1, ATKT3, KUP4 | Potassium transporte... 69.4 1e-11
AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-241... 56.5 9e-08
> AT5G41605.1 | Symbols: | pre-tRNA | chr5:16638166-16638249 FORWARD
LENGTH=84
Length=84
Score = 150 bits (81), Expect = 4e-36
Identities = 83/84 (99%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60
Query 75 TGGGTTCAAACCCCACTTTTGACA 98
|||||||||||||||||| |||||
Sbjct 61 TGGGTTCAAACCCCACTTCTGACA 84
> AT4G11216.1 | Symbols: | pre-tRNA | chr4:6837774-6837857 REVERSE
LENGTH=84
Length=84
Score = 150 bits (81), Expect = 4e-36
Identities = 83/84 (99%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60
Query 75 TGGGTTCAAACCCCACTTTTGACA 98
|||||||||||||||||| |||||
Sbjct 61 TGGGTTCAAACCCCACTTCTGACA 84
> AT1G20040.1 | Symbols: | pre-tRNA | chr1:6948860-6948943 REVERSE
LENGTH=84
Length=84
Score = 150 bits (81), Expect = 4e-36
Identities = 83/84 (99%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60
Query 75 TGGGTTCAAACCCCACTTTTGACA 98
|||||||||||||||||| |||||
Sbjct 61 TGGGTTCAAACCCCACTTCTGACA 84
> AT4G25640.2 | Symbols: DTX35 | detoxifying efflux carrier 35
| chr4:13076444-13079048 REVERSE LENGTH=1760
Length=1760
Score = 147 bits (79), Expect = 5e-35
Identities = 83/85 (98%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1547 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 1606
Query 75 TGGGTTCAAACCCCACTTTTGACAT 99
|||||||||||||||||| ||||||
Sbjct 1607 TGGGTTCAAACCCCACTTCTGACAT 1631
> AT4G25635.1 | Symbols: | pre-tRNA | chr4:13076574-13076657 REVERSE
LENGTH=84
Length=84
Score = 145 bits (78), Expect = 2e-34
Identities = 82/84 (98%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 60
Query 75 TGGGTTCAAACCCCACTTTTGACA 98
|||||||||||||||||| |||||
Sbjct 61 TGGGTTCAAACCCCACTTCTGACA 84
> AT5G52495.1 | Symbols: | pre-tRNA | chr5:21300880-21300963 REVERSE
LENGTH=84
Length=84
Score = 139 bits (75), Expect = 9e-33
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60
Query 75 TGGGTTCAAACCCCACTTTTGACA 98
|||||||||| ||||||| |||||
Sbjct 61 TGGGTTCAAATCCCACTTCTGACA 84
> AT5G25585.1 | Symbols: | pre-tRNA | chr5:8906416-8906499 FORWARD
LENGTH=84
Length=84
Score = 139 bits (75), Expect = 9e-33
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60
Query 75 TGGGTTCAAACCCCACTTTTGACA 98
|||||||||| ||||||| |||||
Sbjct 61 TGGGTTCAAATCCCACTTCTGACA 84
> AT4G23635.1 | Symbols: | pre-tRNA | chr4:12320110-12320193 FORWARD
LENGTH=84
Length=84
Score = 139 bits (75), Expect = 9e-33
Identities = 81/84 (96%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 60
Query 75 TGGGTTCAAACCCCACTTTTGACA 98
|||||||||| ||||||| |||||
Sbjct 61 TGGGTTCAAATCCCACTTCTGACA 84
> AT1G64120.1 | Symbols: | pre-tRNA | chr1:23802553-23802636 FORWARD
LENGTH=84
Length=84
Score = 134 bits (72), Expect = 4e-31
Identities = 80/84 (95%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCG 60
Query 75 TGGGTTCAAACCCCACTTTTGACA 98
|||||||||| ||||||| |||||
Sbjct 61 TGGGTTCAAATCCCACTTCTGACA 84
> AT4G11213.1 | Symbols: | pre-tRNA | chr4:6837560-6837643 REVERSE
LENGTH=84
Length=84
Score = 122 bits (66), Expect = 9e-28
Identities = 78/84 (93%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
||||| |||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 1 GTCAGTATGGCCGAGTGGTCTAAGGCGCCAGACTTAAGTTCTGGTCCTCTTACGAGGGCG 60
Query 75 TGGGTTCAAACCCCACTTTTGACA 98
||||||||||||||||| |||||
Sbjct 61 TGGGTTCAAACCCCACTGCTGACA 84
> AT5G07625.1 | Symbols: | pre-tRNA | chr5:2411148-2411231 FORWARD
LENGTH=84
Length=84
Score = 117 bits (63), Expect = 4e-26
Identities = 78/85 (92%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTA-AGAGGGC 73
|||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 1 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCG-AGAGAGGGC 59
Query 74 GTGGGTTCAAACCCCACTTTTGACA 98
||||||||||| ||||| | |||||
Sbjct 60 GTGGGTTCAAATCCCACATCTGACA 84
> AT5G09345.1 | Symbols: | pre-tRNA | chr5:2898867-2898950 REVERSE
LENGTH=84
Length=84
Score = 117 bits (63), Expect = 4e-26
Identities = 78/85 (92%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTA-AGAGGGC 73
|||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct 1 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCG-AGAGAGGGC 59
Query 74 GTGGGTTCAAACCCCACTTTTGACA 98
||||||||||| ||||| | |||||
Sbjct 60 GTGGGTTCAAATCCCACATCTGACA 84
> AT1G64130.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr1:23802559-23803533 FORWARD
LENGTH=348
Length=348
Score = 95.3 bits (51), Expect = 2e-19
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 21 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCGTGG 77
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGCGTGG 57
> AT4G23640.1 | Symbols: TRH1, ATKT3, KUP4 | Potassium transporter
family protein | chr4:12320152-12324486 REVERSE LENGTH=2847
Length=2847
Score = 69.4 bits (37), Expect = 1e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 57 GGTCCTCGTAAGAGGGCGTGGGTTCAAACCCCACTTTTGACAT 99
|||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2847 GGTCCTCGTAAGAGGGCGTGGGTTCAAATCCCACTTCTGACAT 2805
> AT5G07630.1 | Symbols: | lipid transporters | chr5:2410703-2414711
FORWARD LENGTH=2024
Length=2024
Score = 56.5 bits (30), Expect = 9e-08
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 22 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 51
||||||||||||||||||||||||||||||
Sbjct 164 TGGCCGAGTGGTCTAAGGCGCCAGACTCAA 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9154845882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5