BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947570
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41490.1 | Symbols: | F-box associated ubiquitination effec... 573 1e-162
AT5G41500.1 | Symbols: | F-box and associated interaction doma... 420 2e-116
AT5G41510.1 | Symbols: | F-box and associated interaction doma... 412 3e-114
AT2G38590.1 | Symbols: | F-box and associated interaction doma... 353 2e-96
AT5G41494.1 | Symbols: | pseudogene of F-box family protein | ... 340 1e-92
AT1G48625.1 | Symbols: | pseudogene of F-box family protein | ... 281 8e-75
AT4G33290.1 | Symbols: | F-box and associated interaction doma... 257 1e-67
AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -rel... 250 2e-65
AT4G09452.1 | Symbols: | Pseudogene of AT2G38590; F-box family... 191 1e-47
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 148 8e-35
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 111 1e-23
> AT5G41490.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:16600445-16601608 FORWARD LENGTH=1164
Length=1164
Score = 573 bits (310), Expect = 1e-162
Identities = 526/624 (84%), Gaps = 39/624 (6%)
Strand=Plus/Plus
Query 465 TATGAAATCTACGATTTTGACTCTAG-TTTATGGACAACTCTTGATGTCACTCCACACTG 523
||||||||||| |||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 544 TATGAAATCTATGATTTTGACTCT-GATTTATGGACAACTCTTGATGTCACTTCACACTC 602
Query 524 GTGGATATCTTGCTCTAGCTATGGCGT-TTCTCTTAAGGGAAACACTTACTGGCCTG-CG 581
|||||||| || ||||||| |||||| || ||| ||||||||| |||||||||||| |
Sbjct 603 GTGGATATGTTATTCTAGCTGTGGCGTGTT-TCTCAAGGGAAACGCTTACTGGCCTGTTG 661
Query 582 --AAAAGGAGCTCACG-TGGTCTCTTCGATCACATAATCTGTTTTGATTTTACAAGAGAG 638
||||| |||||| | | | | ||||||||||||||| |||||| ||||||||||||
Sbjct 662 TAAAAAGTAGCTCA-GAAGCTAACATCGATCACATAATCTATTTTGACTTTACAAGAGAG 720
Query 639 AGTTTCGGGCCGCTTCTACCTTTGCCGTTTGGCGCTACGGATCGTGGATATCCATATGTG 698
||||||||||||| ||||||||| |||||||||||||| |||||||||||| ||||||||
Sbjct 721 AGTTTCGGGCCGCCTCTACCTTTACCGTTTGGCGCTACAGATCGTGGATATTCATATGTG 780
Query 699 ACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCAATACTACT-CATA 757
| |||||||||||||||||||||||||||||||||||| |||||||| ||| | | ||||
Sbjct 781 AATTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTTTTTCAGCACTAC-ATTTCATA 839
Query 758 CTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAGCTGAAATGGT 817
| |||| ||||| |||||| || || |||||||||||||||| || ||||||||
Sbjct 840 -T--AAATATGAATTTGAGAT--ATG---GG-TTACGACTAAGATTGAGGCCGAAATGGT 890
Query 818 GTCGTGGAGCAAGTTCTTGAGAATGAATACGAAACCTAATATA--TAT-CCAATTATTTT 874
|||||||||||| |||||||||||| || | |||||||||| ||| ||||||| |||
Sbjct 891 GTCGTGGAGCAAATTCTTGAGAATGGATTTGGGACCTAATATAGATATTCCAATTACTTT 950
Query 875 CCTCATTGACGAGGAGAAGAAAATTTTCATGAGTCTTGA---TAGAGAATTTCCCAAGAC 931
| |||||||||||||||||||| |||||||| || |||| |||||||| ||||||||
Sbjct 951 CTTCATTGACGAGGAGAAGAAAGTTTTCATGGGTTTTGAGCATAGAGAATATCCCAAGAG 1010
Query 932 ATTTCTTAACACCGCTAG-AGAGGCTAAATACTT--G------G-ATCTC-AGAGTATCT 980
|||| |||||| | | | |||||||||||| || | | ||||| | |||| ||
Sbjct 1011 ATTTATTAACATCA-TCGGAGAGGCTAAATATTTAAGAAAATTGGATCTCCA-AGTACCT 1068
Query 981 GACGGCCAATACTGTCGGCCACCTGTGTGCTCTTATGTTCCAAGTTTGGTCCAAATCAAG 1040
| |||||||||||| | |||||| ||||||||||||||||||||| | |||||||||||
Sbjct 1069 CAAGGCCAATACTGTTGCCCACCTTTGTGCTCTTATGTTCCAAGTTCGATCCAAATCAAG 1128
Query 1041 AAACCTACACTGAGGCAAAAGGAT 1064
|||||| ||||||||||||| |||
Sbjct 1129 AAACCTGCACTGAGGCAAAAAGAT 1152
> AT5G41500.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16604002-16605213 FORWARD LENGTH=1212
Length=1212
Score = 420 bits (227), Expect = 2e-116
Identities = 343/398 (86%), Gaps = 12/398 (3%)
Strand=Plus/Plus
Query 41 TCTTCCAAGAGAGTTGATAGAAGAGATTATTTCTAGGGTTCCCTTGAGATCTATGAAATC 100
|||||| || ||||||||||| |||||| |||||||||||||||||||| | |||||| |
Sbjct 21 TCTTCCGAGGGAGTTGATAGAGGAGATTCTTTCTAGGGTTCCCTTGAGAGCCATGAAAGC 80
Query 101 AGTGAGATTAACTTGCAAAAGTTGGAACAATTTATCCAAAAGTGAGA-TCTTTACGAAGA 159
| |||||||||||||||||||||||||||||||||| |||||||||| | |||| |||||
Sbjct 81 AATGAGATTAACTTGCAAAAGTTGGAACAATTTATCTAAAAGTGAGAGT-TTTATGAAGA 139
Query 160 TGCACATTGATAAAGCAGCAACAAGAGAAGAGAATACTATGATGATCT-CGATGATGCCT 218
||||||||| |||||| ||||||||||||||||| || |||||| | | || ||||||||
Sbjct 140 TGCACATTGGTAAAGCTGCAACAAGAGAAGAGAAGACCATGATGGT-TGCGGTGATGCCT 198
Query 219 CACGA-TCTTTATTTAATGAGCGTCA-CTGTGGACGACGTTGATCCATCTGTAGAGCTTA 276
||| | |||| |||| ||||||| | || |||| |||| |||||||| ||||||||
Sbjct 199 CAC-ACTCTTGCTTTAGTGAGCGTTGTC-GTCGACGGCGTTAATCCATCTACAGAGCTTA 256
Query 277 AAGGCCAGCTTAGTTTTCTTGATAATCAAGTTAGT-ATATATCGAGTCTTCCACTATGAG 335
|||| ||| ||||||| ||||| || || || | |||||||||||| |||||||||||
Sbjct 257 AAGGTCAGTTTAGTTTCCTTGACAAGGAA-TTCTTTATATATCGAGTCATCCACTATGAG 315
Query 336 GGTTTGTTGTTATGCATCTTTGAA-GACCCTACTAGGGTTGTGGTTTTGAATCCGTATTT 394
|||||| ||||||| || |||||| ||| |||||||| ||||||||| ||||||||||||
Sbjct 316 GGTTTGCTGTTATGTAT-TTTGAAAGACGCTACTAGGATTGTGGTTTGGAATCCGTATTT 374
Query 395 GCGGCAAGCAAGGTGGATCCAAATCAGATTTTCTCACC 432
| |||||| |||||||||||||||||||| ||||||||
Sbjct 375 GGGGCAAGAAAGGTGGATCCAAATCAGATATTCTCACC 412
Score = 409 bits (221), Expect = 3e-113
Identities = 526/663 (79%), Gaps = 62/663 (9%)
Strand=Plus/Plus
Query 464 GTATGAAATCTACGATTTTGACTCTAGTTTATGGACAACTCTTGATGTCACTCCACACTG 523
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 537 GTATGAAATCTACGATTTTGACTCTTGTTTATGGACAACTCTTGATATCACTCCACATTG 596
Query 524 GTGG-ATATCTT-G-CTCTAGCTATGGCGTTTCTCTTAAGGGAAACACTTACTGGCCTGC 580
| || ||||||| | || || | | | ||||| ||||||||||||||||||||||||||
Sbjct 597 G-GGTATATCTTGGACT-TA-CCCTAGAGTTTCCCTTAAGGGAAACACTTACTGGCCTGC 653
Query 581 --GA-AAAGGAGCTCACGTGGTCTCTTCGATCACATAATCTGTTTTGATTTTACAAGAGA 637
|| ||| || | || ||| || ||||||||||||||||||||||||||||| ||
Sbjct 654 TAGAGAAATGAACACAAAAGGTTTCCAAGATCACATAATCTGTTTTGATTTTACAAGTGA 713
Query 638 GAG-TTTCGGGCCGCTTCTACCTTTGCCGTTTGGCGCTACGGATCGTGGATATCCATATG 696
||| ||| || |||||||||||| | || | || ||| | | | | || || || |
Sbjct 714 GAGATTT-GGTCCGCTTCTACCTCTACC-TA-GG-GCT-CA-A--G-G-ATGTC-AT--G 760
Query 697 TGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCAATA-CTACTC- 754
||| |||||||||||||||||||||||||||||||| |||| || |||| || | |
Sbjct 761 TGAGTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGTTTTACTTAAGCACCGGCTGCACC 820
Query 755 AT-ACTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAG-CTGAA 812
| | | || | | |||||||| |||| ||||||||||||||||||||||| | | |||
Sbjct 821 ACGATT-CATACG--AATATGAGTTTGAGATATGGATTACGACTAAGATTGACGTC-GAA 876
Query 813 ATGGTGTCGTGGAGCAAGTTCTTGAGAATGAATACGAAACCTAATATATA--T-CCAATT 869
|||||||||||||||||||||||||||||| ||| || |||||| ||| | | ||| ||
Sbjct 877 ATGGTGTCGTGGAGCAAGTTCTTGAGAATGGATATGAGACCTAAGATAAAGCTTCCACTT 936
Query 870 ATTTTCCT-CATTGACGAGGAGAAGAAAATTTTCATGAGTCTTGAT-A-GAG-AATTTCC 925
| |||| | | ||||||| ||||||||| |||||||| || ||||| | | | ||| |||
Sbjct 937 AGTTTC-TACGTTGACGAAGAGAAGAAAGTTTTCATGGGTTTTGATCATGGGGAATATCC 995
Query 926 CAAGACATTTCTTAACACCGCT--AGAGA--GG---CT-AA-ATACTTGGATCTCAGAGT 976
|||| ||||||||||| | | ||||| || || || | | ||||||||| ||||
Sbjct 996 CAAGTTATTTCTTAACATCATTGGAGAGACTGGATTCTTAAGAAAATTGGATCTCGGAGT 1055
Query 977 ATC-TGACGGCCAATACTGT-CGGCCACCTGTGTGCTCTTATGTTCCAAGTTTGGTCCAA 1034
| | ||| ||||| | || || ||| || |||||||||||||||||||||||||
Sbjct 1056 A-CATGAAGGCCAC--C-GTTCG-CCA--TG----CTCTTATGTTCCAAGTTTGGTCCAA 1104
Query 1035 ATCAAGAAACCTACACTGAGGCAAAAGGATGAAACAAAGTAGTTTAGAAGAGCATTGATT 1094
|||||| | ||| || ||| ||||| ||| |||||||||||||||||||| | | ||||
Sbjct 1105 ATCAAGCATCCTGCAG-GAGACAAAATGATAAAACAAAGTAGTTTAGAAGACCGTCGATT 1163
Query 1095 TGC 1097
|||
Sbjct 1164 TGC 1166
> AT5G41510.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16607124-16608326 FORWARD LENGTH=1203
Length=1203
Score = 412 bits (223), Expect = 3e-114
Identities = 360/423 (85%), Gaps = 22/423 (5%)
Strand=Plus/Plus
Query 21 ATGACGTCGATGATATCCAGTCTTCCAAGAGAGTTGATAGAAGAGATTATTTCTAGGGTT 80
||| || ||||||| |||| ||||||||| || |||||||| |||||| |||||||||||
Sbjct 1 ATGGCGACGATGATCTCCAATCTTCCAAGGGATTTGATAGAGGAGATTTTTTCTAGGGTT 60
Query 81 CCCTTGAGATCTATGAAATCAGTGAGATTAACTTGCAAAAGTTGGAACAATTTATCCAAA 140
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCCTTGACATCTATGAAAGCAGTGAGATTAACTTGCAAAAGTTGGAACAATTTATCTAAA 120
Query 141 AGTGAGATCTTTACGAAGATGCACATTGATAAAGCAGCAACAAGAGAAGAGAATACTATG 200
||||||| |||||||||| ||||||||| || ||||||||||||||||||||| ||||||
Sbjct 121 AGTGAGAGCTTTACGAAGGTGCACATTGGTAGAGCAGCAACAAGAGAAGAGAAGACTATG 180
Query 201 ATGATCTCGATG--ATGCCTCACGATCTTTATTTAATGAGC---GTCACTGTGGACGACG 255
|| | |||||| ||||||||| | ||| |||||||||| |||| | | ||||||
Sbjct 181 AT-AG-TCGATGTGATGCCTCACAAACTTAATTTAATGAGTATTGTCA-TC-G-ACGACG 235
Query 256 TTGA-TCCATCTGTAGAGCTTAAAGGCCAGCTTAGTTTTCTTGATAATCAAGTTA--GTA 312
|| | |||||||| |||| ||||||| ||| ||||||| ||| | || || | | |||
Sbjct 236 TT-ACTCCATCTGCAGAGTTTAAAGGTCAGTTTAGTTTACTTCACAAG-AACT-ACCGTA 292
Query 313 TATATCGAGTCTTCCACTATGAGGGTTTGTTGTTATGCATCTTTGAA-GACCCTACTAGG 371
|| ||| |||||| |||||||||||||||||||||||||| | |||| || |||||||||
Sbjct 293 TAAATCAAGTCTTACACTATGAGGGTTTGTTGTTATGCAT-TATGAAAGATCCTACTAGG 351
Query 372 GTTGTGGTTTTGAATCCGTATTTGCGG-CAAGCAAGGTGGATCCAAATCAGAT-TTTCTC 429
||||||||| ||||||||||||| || ||| |||||||||||||| |||| | ||| ||
Sbjct 352 ATTGTGGTTTGGAATCCGTATTTG-GGACAAACAAGGTGGATCCAACTCAGGTATTT-TC 409
Query 430 ACC 432
|||
Sbjct 410 ACC 412
Score = 377 bits (204), Expect = 1e-103
Identities = 518/660 (78%), Gaps = 59/660 (9%)
Strand=Plus/Plus
Query 464 GTATGAAATCTACGATTTTGACTCTAGTTTATGGACAACTCTTGATGTCACTCCACACTG 523
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 537 GTATGAAATCTACGATTTTGACTCTGGTTTATGGACAACTCTTAATGTCACTCCACACTG 596
Query 524 GTGGATATCT-TGC-TCTAGCTATGGCGTTTCTCTTAAGGGAAACACTTACTGGCCTGC- 580
| || ||| | | | || || | | ||||| ||||||||||||||||||||||||||
Sbjct 597 G-GG-TATTTATTCGACTTGCCCTTGTGTTTCCCTTAAGGGAAACACTTACTGGCCTGCT 654
Query 581 -GA-AAAGGAGCTCACGTGGTCTCTTCGATCACATAATCTGTTTTGATTTTACAAGAGAG 638
| |||||||| ||| ||| || ||| | |||||| |||| |||||||||||||||
Sbjct 655 AAAGAAAGGAGCACACAAGGTTTCCAAGATTATATAATCCGTTTCGATTTTACAAGAGAG 714
Query 639 AG-TTTCGGGCCGCTTCTACCTTTGCCGTTTGGCGCTACGGATCGTGGATATCCATATGT 697
|| ||| || || |||||| | | | | || |||||||||||| || | ||| |||
Sbjct 715 AGATTT-GGACCCCTTCTA-----G-C-TCT-GC-CTACGGATCGTGAATCTTCATTTGT 764
Query 698 GACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCAATA-CTACTC-A 755
|| |||||||||||||||||||||||||||||||||||||||| |||| || | | |
Sbjct 765 GAGTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTAAGCACCGGCTGCACCA 824
Query 756 T-ACTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAG-CTGAAA 813
| | | || | | |||||||| |||| ||||||||||||||||||||||| | | ||||
Sbjct 825 TGATT-CATACG--AATATGAGTTTGAGATATGGATTACGACTAAGATTGAGGTC-GAAA 880
Query 814 TGGTGTCGTGGAGCAAGTTCTTGAGAATGAATACGAAACCTAATATATA--T-CCAATTA 870
|||| |||||||||||||||||||||||| ||| || |||||| || | | ||| |||
Sbjct 881 TGGTTTCGTGGAGCAAGTTCTTGAGAATGGATATGAGACCTAAGATGGAGCTTCCACTTA 940
Query 871 TTTTCCT-CATTGACGAGGAGAAGAAAATTTTCATGAG-TCTTGAT-A-G-AGAATTTCC 925
|||| | ||||||||| ||||||||| |||||||| | | ||||| | | ||||| |||
Sbjct 941 CTTTC-TACATTGACGAAGAGAAGAAAGTTTTCATGGGAT-TTGATCATGGAGAATATCC 998
Query 926 CAAG--AC-ATTTCTTAACACCGCTAGAGAGGCTAAATACTTG-GATC-T-CAGAGTATC 979
|||| | |||||||||| || | ||||| || || ||| || | | ||| ||
Sbjct 999 CAAGTTATTATTTCTTAACGTCGTTGGAGAGACTGGATTCTTAAGAAAATTC-GAGAATA 1057
Query 980 TGACGGCCAATACTGT-CGGCCACCTGTGTGCTCTTATGTTCCAAGTTTGGTCCAAATCA 1038
| | | ||||| || || ||| || ||||||||||||||||||||||||| |||
Sbjct 1058 T--C--C-AATACCGTTCG-CCA--TG----CTCTTATGTTCCAAGTTTGGTCCAAGTCA 1105
Query 1039 AGAAACCTACACTGAGGCAAAAGGATGAAA-CAAAGTAGTTTAGAAGAGCATTGATTTGC 1097
|||||| | ||| ||| || | || |||| ||| ||||||||||| | | | |||||||
Sbjct 1106 AGAAACTTGCAC-GAGACAGACTGA-GAAAACAACGTAGTTTAGAAAACCGTCGATTTGC 1163
> AT2G38590.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:16142897-16144184 FORWARD LENGTH=1288
Length=1288
Score = 353 bits (191), Expect = 2e-96
Identities = 518/665 (78%), Gaps = 65/665 (10%)
Strand=Plus/Plus
Query 464 GTATGAAATCTACGATTTTGACTCTAG-TTTATGGACAACTCTTGATGTCACTCCACACT 522
||||||||| ||||||||| ||||| | || |||||||||||||||||||||||||||||
Sbjct 573 GTATGAAATTTACGATTTTAACTCT-GATTCATGGACAACTCTTGATGTCACTCCACACT 631
Query 523 GGTGGATAT-CTTGCTCTAG-CTATGGCGTTTCTCTTAAGGGAAACACTTACTGGCCTGC 580
|||| |||| | || | | | | ||| |||||||| || ||||||||||||||| |||
Sbjct 632 GGTGTATATAC-TGTTGT-GACCGTGGTGTTTCTCTCAACGGAAACACTTACTGGTGTGC 689
Query 581 --GA-AAAGG--AGCTCACG-TGGTCTCT-TCGATCACATAATCTGTTTTGATTTTAC-A 632
| ||||| ||| | | | | | | |||||||||| || | |||||||||||| |
Sbjct 690 TAAAGAAAGGAAAGCAGAAGACGATAT-TGTCGATCACATCATATCTTTTGATTTTACAA 748
Query 633 A-GAGAGAGTTTCGGGCCGCTTCTACCTTTGCCGT-TTGGCGCTACGGATCGTGGATATC 690
| |||||| ||| ||||||||| | |||||||||| | | | || ||| | || ||||
Sbjct 749 ACGAGAGA-TTT-GGGCCGCTTTTGCCTTTGCCGTCTAAG-GTTATGGAACATGAATAT- 804
Query 691 CATA-TGTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCAATAC 749
| | ||| |||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 805 GAAATTGTAACTTTATCTTATGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCA-T-- 861
Query 750 TACTCATACTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAGCT 809
||| | | ||| || || | ||||| |||||||||||||||||||||||||||| |||
Sbjct 862 TACG-A-A--GCAGAT-TGGA-ATGAGTTTGATATATGGATTACGACTAAGATTGATGCT 915
Query 810 GAAATGGTGTCGTGGAGCAAGTTCTTGAGAATGAATACGAAACCTAATATATA--T-CCA 866
||| ||||||||||||||| ||||||||||||| ||||| ||||| ||| | | |||
Sbjct 916 GAAGTGGTGTCGTGGAGCATGTTCTTGAGAATGGATACGGGACCTAGGATAGAGGTTCCA 975
Query 867 -AT-TAT-T-----TTCCT-CATTGACGAGGAGAAGAAAATTTTCATGAGTCTTGATAGA 917
|| ||| | || || |||||| |||||||||||| | |||| || |||| |||
Sbjct 976 CATATATGTGAAGGTTTCTTCATTGATGAGGAGAAGAAAGTCGCCATGGGTTTTGA-AGA 1034
Query 918 -GAATT---TCCCAAGACATTTCTTAACACCGCTAGA-GA-GG---C-TAA-ATACTTGG 966
|| || || ||| |||||| | | || | ||| | || | ||| | | ||||
Sbjct 1035 AGACTTCGATCGCAAAACATTTATCATCATTGG-AGAAGCTGGATACGTAAGAAAATTGG 1093
Query 967 ATCTCAGAGTA--TCT-GACGGCCAATACTGTCGGCCACCTGTGTGCTCTTATGTTCCAA 1023
|| ||| || | | | ||| | || | ||||||||| ||||||| |||||||||||||
Sbjct 1094 ATATCAAAGCACATGTAGACAGA-AA-A-TGTCGGCCAACTGTGTGTTCTTATGTTCCAA 1150
Query 1024 GTTTGGTCCAAATCAAGAAACCTACACTGAGGCAAAAGGATGAA-ACAAAGTAGTTTAGA 1082
||||||||||||||||||||||| ||| |||||||||||| || |||||| || |||||
Sbjct 1151 GTTTGGTCCAAATCAAGAAACCTGCAC-GAGGCAAAAGGAA-AAGACAAAGCAGCTTAGA 1208
Query 1083 AGAGC 1087
| |||
Sbjct 1209 AAAGC 1213
Score = 207 bits (112), Expect = 1e-52
Identities = 209/254 (82%), Gaps = 13/254 (5%)
Strand=Plus/Plus
Query 21 ATGACGTCGATGATATCCAGTCTTCCAAGAGAGTTGATAGAAGAGATTATTTCTAGGGTT 80
|||||| ||||||| || | ||||||||| | |||||||| |||||| ||| |||||||
Sbjct 1 ATGACGACGATGATCTCTAATCTTCCAAGGGTTTTGATAGAGGAGATTTTTTTTAGGGTT 60
Query 81 CCCTTGAGATCTATGAAATCAGTGAGATTAACTTGCAAAAGTTGGAACAATTTATCCAAA 140
|| |||| |||| ||| | |||||||||||||||||||||||||||||| | ||||||||
Sbjct 61 CCTTTGAAATCTTTGAGAGCAGTGAGATTAACTTGCAAAAGTTGGAACACTCTATCCAAA 120
Query 141 AGTGAG-ATCTTTACGAAGATGCACATT-GATAAA-GCAGCAACAAGAGAAGAGAA-TAC 196
||| || | ||||| |||| || ||||| | |||| | |||||||||||||||| | | |
Sbjct 121 AGT-AGGAGCTTTAGGAAGTTGTACATTAG-TAAAAG-AGCAACAAGAGAAGAGGAGTCC 177
Query 197 TATGATGATCTCGATGATGCCTCACGATCTTTATTTAATGAGCGTCACT-GT-G--GACG 252
||||||||| | |||||| | ||||||||||| |||||| ||| | || | ||||
Sbjct 178 -ATGATGATCGCTATGATGAATTTCGATCTTTATTCAATGAGGGTCG-TAGTTGACGACG 235
Query 253 ACGTTGATCCATCT 266
||||||||||||||
Sbjct 236 ACGTTGATCCATCT 249
> AT5G41494.1 | Symbols: | pseudogene of F-box family protein
| chr5:16602589-16603438 FORWARD LENGTH=850
Length=850
Score = 340 bits (184), Expect = 1e-92
Identities = 526/680 (77%), Gaps = 68/680 (10%)
Strand=Plus/Plus
Query 464 GTATGAAATCTACGATTTTGACTCTAG-TTTATGGACAACTCTTGATGTCACTCCACACT 522
||| ||||||||||||||||||| ||| || |||||||||||||||||||| ||||||||
Sbjct 150 GTACGAAATCTACGATTTTGACT-TAGATTCATGGACAACTCTTGATGTCAGTCCACACT 208
Query 523 GG--T-GGATATCTTGCTCTAGCTATGGCGTTTCTCTTAAGGGAAACACTTACTGGCCTG 579
|| | |||||||| | | || |||| || |||||||| ||||||||||||||| ||
Sbjct 209 GGCATATAATATCTTG-T-GACCT-TGGCATTACTCTTAAGAGAAACACTTACTGGCATG 265
Query 580 C--GA-AAA-GGAGCT-CACG-TGGTCTCTTCGATCACATAATCTGTTTTGATTTTACAA 633
| || ||| | | | | | | || ||||||||||||| ||||||||||||||||
Sbjct 266 CTAGAGAAATGAATTTAGAAGAAAATATCGTCGATCACATAATATGTTTTGATTTTACAA 325
Query 634 GAGAGAG-TTTCGGGCCGCTTCTACCTTTGCCGTTTGGCGCTACGGATCGTGGA-TATCC 691
||||||| ||| | |||||||| ||| ||||| || ||| | || || | || |||
Sbjct 326 GAGAGAGATTT-AGACCGCTTCTGCCTCTGCCGGTTAGCGTTGGGGTTCAT-GATTATGA 383
Query 692 ATATGTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCAATACTA 751
|||| ||||||||||| |||||| ||||||||||||||| ||||||||||||| || |
Sbjct 384 ATATTTGACTTTATCTCGTGTTAGAGAAGAGAAGCTTGCCGCTTTATTTCAGC---AC-A 439
Query 752 CTCATACTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAGCTGA 811
| | | | |||| | ||||||| |||| ||||||||||| ||||||||||| |||||
Sbjct 440 C-C-GAAT-CAAA--TCCATATGAGCTTGAAATATGGATTACAACTAAGATTGAGGCTGA 494
Query 812 AATGGTGTCGTGGAGCAAGTTCTTGAGAATGAATACGAAACCTAATATATA--TC-CAAT 868
||||||||||||||||||||||||||||||| ||||| |||| |||||| || |||
Sbjct 495 AATGGTGTCGTGGAGCAAGTTCTTGAGAATGGATACGGGACCTGATATATTGGTCACAAC 554
Query 869 TAT-T-T------TCCT-CATTGACGAGGAGAAGAAAATTTTCATGAG-TCTTGAT-A-G 916
||| | | | || ||||||||||||||||||| | |||| | | || || | |
Sbjct 555 TATATGTGAAGGATACTTCATTGACGAGGAGAAGAAAGTCGCCATGGGATTTTAATGAAG 614
Query 917 A--GAAT---TTCCCAAGA-CATTT--C-TTAAC--ACCG-CTAGAGAGGCTAAATAC-T 963
| ||| |||| |||| ||||| | ||| | | || || | || |||| |
Sbjct 615 ACAGAAGACATTCC-AAGAACATTTAGCATTATTGGAGAGGCTGGATA--CTTAATAAAT 671
Query 964 TG-GATCTCAGAGTATCTGACGG-CCAA-TACTGTCGGCCACCTGTGTGCTCTTATGTTC 1020
| ||| | ||||| || || |||| | ||||||| || |||||||||||||||||
Sbjct 672 TTAGATATTGGAGTA-CTCACAAACCAAATG-TGTCGGCTACATGTGTGCTCTTATGTTC 729
Query 1021 CAAGTTTGGTCCAAATCAAGAAACCTACACTGAGGCAAAAGGATGAAA--CAAAGTAGTT 1078
|||||||||||||||||||||||||| |||| | |||||||||| ||| ||||| ||||
Sbjct 730 CAAGTTTGGTCCAAATCAAGAAACCTGCACT-ACGCAAAAGGATCAAAGACAAAGCAGTT 788
Query 1079 TAGAAGAGC-ATTGATTTGC 1097
||||| ||| | |||||||
Sbjct 789 TAGAAAAGCCAC-GATTTGC 807
> AT1G48625.1 | Symbols: | pseudogene of F-box family protein
| chr1:17979561-17980815 FORWARD LENGTH=1255
Length=1255
Score = 281 bits (152), Expect = 8e-75
Identities = 354/446 (79%), Gaps = 35/446 (8%)
Strand=Plus/Plus
Query 464 GTATGAAATCTACGATTTTGACTCTAG-TTTATGGACAACTCTTGATGTCACTCCACACT 522
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 577 GTATGAAATCTACGATTTTGACTC-GGATTTATGGACAACTCTTGATGTCACTCCACACT 635
Query 523 GGTGGATA-TC-TTGCTCTA-GCTATGGCGTTTCTCTTAAGGGAAACACTTACTGGCCTG 579
||| ||| | || ||| | | | || ||||| || ||||||||||| |||||| ||
Sbjct 636 GGTTTATAGTTATTTCTCAAAG-T--GGTGTTTCCCTCAAGGGAAACACATACTGGTGTG 692
Query 580 CGA--AA-AGGAGCTCACGTGGTCTCTTCGATCACATAATCTGTTTTGATTTTACAAGAG 636
| | || |||||| || | | | ||||||||| || |||||||||||||| ||||
Sbjct 693 CTAGGAAGAGGAGCGG-CG-GTTATAG-CGATCACATTATTTGTTTTGATTTTACTAGAG 749
Query 637 AGAG-TTTCGGGCCGCTTCTACCTTTGCCGTTTGGCGCTACGGATCGTGGAT-ATCCATA 694
|||| ||| || |||||| | |||||||||||| || || |||||| || || |||
Sbjct 750 AGAGATTT-GGACCGCTTTTGCCTTTGCCGTTTAGCTTTATTGATCGTC-ATCATTCATG 807
Query 695 TGTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCA-ATACTACT 753
||||| |||||||||||||| |||||||||||||||| |||||||||| | | | ||
Sbjct 808 TGTGATTTTATCTTGTGTTAGTGAAGAGAAGCTTGCAGTTTTATTTCAGTACA-AGGAC- 865
Query 754 CA-TACTGCAAATGTGAATATGAGATTGATATATGGATTAC-GACTAAGATTGAAGCTGA 811
|| |||| ||| ||| | || |||| ||||||||||| | ||||| |||| || ||
Sbjct 866 CACTACTATAAA----AATGT-AG-TTGAAATATGGATTACAG-CTAAGCTTGAGGCCGA 918
Query 812 AATGGTGTCGTGGAGCAAGTTCTTGAGAATGAATACGAAACCTAATATATATC-CAATTA 870
|||||||||||||||||||||||||||||| |||||| || ||| |||| | || |
Sbjct 919 AATGGTGTCGTGGAGCAAGTTCTTGAGAATAAATACGGGGCC-AAT-TATA-CACACG-A 974
Query 871 TTTTCCTCATTGACGAGGAGAAGAAA 896
|||| ||||| ||||||| ||||||
Sbjct 975 GTTTCTTCATTAACGAGGAAAAGAAA 1000
> AT4G33290.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:16049573-16050865 FORWARD LENGTH=1293
Length=1293
Score = 257 bits (139), Expect = 1e-67
Identities = 314/393 (80%), Gaps = 34/393 (9%)
Strand=Plus/Plus
Query 466 ATGAAATCTACGATTTTGACTCTAG-TTTATGGACAACTCTTGATGTCACTCCACACTGG 524
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||
Sbjct 530 ATGAAATCTACGATTTTGACTCT-GATTTATGGACAACTCTTGATGTCACTCCACATTGG 588
Query 525 TGGATA---TC---TTGCTC-T-AG-CTATGGCGTTTCTCT-TAAGGGAAACACTTACTG 574
| ||| || ||| || | | | | ||||| ||||| ||||| |||||||||||
Sbjct 589 TATATATTGTCTAATTGGTCTTGTGTCCAAGGCGTCTCTCTCAAAGGG-AACACTTACTG 647
Query 575 GCCTGC--GAAAAG-GAGCTCACG-TGGTCTCTTCGATCACATAATCTGTTTTGATTTTA 630
| ||| || ||| | |||| | ||| | | | |||| |||||||||||||||||||
Sbjct 648 GTGTGCTAGAGAAGAAAACTCA-GATGG--T-TACAATCATATAATCTGTTTTGATTTTA 703
Query 631 CAAGAGAGAG-TTTCGGGCCGCTTCTACCTTTGCCGTTTGGCGCTACGGATCGTGGATAT 689
|||||||||| ||| || |||||||| ||| | ||| || || || ||| || ||||
Sbjct 704 CAAGAGAGAGATTT-GGTCCGCTTCTGCCTCTACCGGTTAACGTTATAGATAATGAATAT 762
Query 690 CCATATGTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCA-ATA 748
||||||||||| ||||||||||| ||||| |||| |||| |||||||||||||| | |
Sbjct 763 GAATATGTGACTTCATCTTGTGTTAGAGAAGGGAAGATTGCGGCTTTATTTCAGCACA-A 821
Query 749 CTACTCATACTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAGC 808
| | ||||| | || | | | ||| |||| ||||||||||||||||||||||| ||
Sbjct 822 CGATTCATA-TCCA--T---A-T--GAGCTTGAGATATGGATTACGACTAAGATTGAGGC 872
Query 809 TGAAATGGTGTCGTGGAGCAAGTTCTTGAGAAT 841
|||||||||||||||| |||||||||||||||
Sbjct 873 GGAAATGGTGTCGTGGAACAAGTTCTTGAGAAT 905
Score = 104 bits (56), Expect = 2e-21
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 1004 TGTGTGCTCTTATGTTCCAAGTTTGGTCCAAATCAAGAAACCTACACTGAGGCAAAAGGA 1063
||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||
Sbjct 1125 TGTGTGCTCTTATGTTCCAAGTTTGGTCCGAATTAAGAAACCTGCACA-AGGCAAAAGGA 1183
Query 1064 TGAA-ACAAAGTAGTTTAGAAGAGCATT-GATTTG 1096
|| |||||| ||||||||| ||| || ||||||
Sbjct 1184 A-AAGACAAAGCAGTTTAGAAAAGC-TTCGATTTG 1216
> AT4G09143.1 | Symbols: | pseudogene, type 2 peroxiredoxin -related,
similar to type 2 peroxiredoxin, putative | chr4:5821214-5822443
FORWARD LENGTH=1230
Length=1230
Score = 250 bits (135), Expect = 2e-65
Identities = 359/456 (79%), Gaps = 59/456 (13%)
Strand=Plus/Plus
Query 464 GTATGAAATCTACGATTTTGACTCTAGTTTATGGACAACTCTTGATGTCACTCCACACTG 523
|||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 540 GTATGAAATCTATGATTTTGACTCGGGTTTATAGACAACTCTTGATGTCACTCCACACTG 599
Query 524 GTGGATAT-C-TTGCTCTAGCTA-TGGCGTTTCTCTTAAGGGAAACACTTACTGGCCTGC 580
| || | | | ||| ||| | | |||||||||| |||||||||||||||||||| |||
Sbjct 600 G-GG-TGTACATTGTTCT-TCCAGTGGCGTTTCTATTAAGGGAAACACTTACTGGTGTGC 656
Query 581 --GA-AAAGGAGCTCAC-GTGGTCTCTTCGATCACATAATCTGTTTTGATTTTACAAGAG 636
| ||||||| |||| | |||| | |||||||| ||||||||||||||||||||||
Sbjct 657 TAAAGAAAGGAGGTCACAG-GGTCACAAAGATCACATTATCTGTTTTGATTTTACAAGAG 715
Query 637 AGAGTTTCGGGCCGCTTCTACCTTTGCCGTTTGGC-GCTACGGATCGTGGATATCCATAT 695
|||| |||||||||||||| ||| | |||| | | || | | || || ||
Sbjct 716 AGAGATTCGGGCCGCTTCTCCCTCTACCGT--G-CAGC---G---C-TG--TAG--AT-- 759
Query 696 GTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCAATACTACTCA 755
||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 760 GTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCG-T--TA-TC- 814
Query 756 TACTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAGCTGAAATG 815
| | | || | | || ||||| ||||||||||||||||||| || |||| |
Sbjct 815 T---G-A---GT---T--G-GA--GATAT--GGATTACGACTAAGATTGATGCCGAAACG 857
Query 816 GTGTCGTGGAGCAAGTTCTTGAGAAT-GAATACGAAACCTAATATA----TATC-CAATT 869
||||||||||||||||| || ||||| || ||||| |||||| ||| |||| || |
Sbjct 858 GTGTCGTGGAGCAAGTTATTTAGAATTGA-TACGAGACCTAAGATAAAGATATCACA-T- 914
Query 870 ATTTTCCTCATTGACGAGGAGAAGAAAATTTTCATG 905
| |||| || | ||||| ||||||||| | ||||||
Sbjct 915 AGTTTCTTCGTAGACGAAGAGAAGAAAGTCTTCATG 950
> AT4G09452.1 | Symbols: | Pseudogene of AT2G38590; F-box family
protein | chr4:5985822-5986654 FORWARD LENGTH=833
Length=833
Score = 191 bits (103), Expect = 1e-47
Identities = 293/382 (77%), Gaps = 24/382 (6%)
Strand=Plus/Plus
Query 464 GTATGAAATCTACGATTTTGACTCTAGTTTA-TGGACAACTCTTGATGTCACTCCACACT 522
|||||||||||| ||| || |||| | | | ||||||||||||||||||| ||||| |
Sbjct 218 GTATGAAATCTATGATGTTAACTC-GGGTGATTGGACAACTCTTGATGTCATTCCACGTT 276
Query 523 GGTGGATATCTTGCTCTAGCTATGGCGTTTCTCTTAAGGGAAACACTTACTGGCCTGC-- 580
|| | |||| ||| ||| | | ||||||||||||||||||| | ||| ||| |||
Sbjct 277 GGCGTATATATTGTTCTTCCCCTAGCGTTTCTCTTAAGGGAAATAGTTATTGGTGTGCTA 336
Query 581 -GAAAAGGAGCTCACG-TGGTCTCTTCG-ATCACATAATCTGTTTTGATTTTACAAGAGA 637
||||||||||| || ||| | | |||||||||||| ||||||||||||||||||
Sbjct 337 ATAAAAGGAGCTC-CGAAGGTAGC-AAGAATCACATAATCTATTTTGATTTTACAAGAGA 394
Query 638 GAG-TTTCGGGCCGCTTCTACCTTTGCCGTTTGGCGCTACGGATCGTGGATAT-C-CATA 694
||| ||| ||||||||||| ||| | || || || | | | ||| ||| | |||
Sbjct 395 GAGATTT-GGGCCGCTTCTGCCTCTACCAATTCACGTTGTAGCTAATGGCTATACTAATA 453
Query 695 --TGTGACTTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTATTTCAGCAATACTAC 752
|||||||||||||||||||||||||||||| ||||| | |||||||||||| |
Sbjct 454 TTTGTGACTTTATCTTGTGTTAAAGAAGAGAAACTTGCGGTTTTATTTCAGCAC--CG-- 509
Query 753 TCATACTGCAAATGTGAATATGAGATTGATATATGGATTACGACTAAGATTGAAGCTGAA 812
| | || | | | | | |||| |||| |||| |||||||||||||||||| || |||
Sbjct 510 TGA-AC-G-ATACAT-AG-ATGATCTTGAGATATAGATTACGACTAAGATTGAGGCCGAA 564
Query 813 ATGGTGTCGTGGAGCAAGTTCT 834
||||||| | |||||||||||
Sbjct 565 ATGGTGTTGAAGAGCAAGTTCT 586
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 148 bits (80), Expect = 8e-35
Identities = 175/217 (81%), Gaps = 22/217 (10%)
Strand=Plus/Plus
Query 463 AGTATGAAATCTACGATTTTGACTCTAG-TTTATGGACAACTCTTGATGTCACTCCACAC 521
||||||||||||| |||||||| ||| | | ||||||| ||||||||||| ||||||||
Sbjct 1016 AGTATGAAATCTATGATTTTGATTCT-GATGTATGGACTACTCTTGATGTGTCTCCACAC 1074
Query 522 TGGTGGATATCTTGCTCT-AGCTATGGCGTTTCTCTTAAGGGAAACACTTACT-GGCCTG 579
|||| ||| || ||| | | |||| ||||||| |||||||||||||||| || | |
Sbjct 1075 TGGT--TTATAATG-TCTGAAC-GTGGCCTTTCTCTCAAGGGAAACACTTACTGGGGC-G 1129
Query 580 C-GAA-AA-GG-A-GC-TCACGTGGTCTC-TTCGATCACATAATCTGTTTTGATTTTACA 632
| || || || | || | ||| | || | || ||||| |||||||||||||||||||||
Sbjct 1130 CTAAAGAACGGCACGCAT-ACG-GATC-CATT-GATCATATAATCTGTTTTGATTTTACA 1185
Query 633 AGAGAGAG-TTTCGGGCCGCTTCTACCTTTGCCGTTT 668
|||||||| ||| || |||||||||||| |||| |||
Sbjct 1186 AGAGAGAGATTT-GGACCGCTTCTACCTCTGCCATTT 1221
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 111 bits (60), Expect = 1e-23
Identities = 118/144 (82%), Gaps = 12/144 (8%)
Strand=Plus/Plus
Query 601 TCTTCGATCACATAATCTGTTTTGATTTTACAAGAGAGAG-TTTCGGGCCGCTTCTACCT 659
|||| ||||||||||||||||||||||||||||| ||||| ||| || |||||| | |||
Sbjct 705 TCTT-GATCACATAATCTGTTTTGATTTTACAAGTGAGAGATTT-GGTCCGCTTATGCCT 762
Query 660 TTGCCGTTTGGC-GCTA--CGGATCGTGGATATCCATATGTGACTTTATCTTGTGTTAAA 716
|||||||||| | || || || ||| | || | ||||||| |||||||||||| |
Sbjct 763 TTGCCGTTTGTTAGATATACG--TCC-GGA-AGCC-T-TGTGACTCTATCTTGTGTTAGA 816
Query 717 GAAGAGAAGCTTGCAGCTTTATTT 740
|||||||||||||| | ||| |||
Sbjct 817 GAAGAGAAGCTTGCGGTTTTGTTT 840
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53764783695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5