BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947573
Length=1609
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41460.1 | Symbols: | Protein of unknown function (DUF604) ... 2483 0.0
> AT5G41460.1 | Symbols: | Protein of unknown function (DUF604)
| chr5:16589598-16592241 REVERSE LENGTH=1745
Length=1745
Score = 2483 bits (1344), Expect = 0.0
Identities = 1527/1615 (95%), Gaps = 14/1615 (1%)
Strand=Plus/Plus
Query 5 ATCTTTGGTTCTTGAGATGAAGTTG-AT-----TAAAGATCCATCAGAGAAGCTAGTGTG 58
||||||||||||| |||||||| || || ||||||||| ||||||||||| ||||
Sbjct 29 ATCTTTGGTTCTTAAGATGAAGCTGAATAACCAGAAAGATCCAGCAGAGAAGCTAATGTG 88
Query 59 GGAACGGACTTTATCCGGATCCGGTTCACCAACCCGACCCGTATCCAAACTAATGGTGAC 118
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 89 GGAACGGACTTTATCCGGATCCGGTTCACCGACCCGACCCGTATCCAAACTTATGGTAAC 148
Query 119 GCTCCTCCTTCTCGTCTCCGCCACTTACGTCGTCTACACACTAAAACTCATCTCAAACTC 178
||||||||| |||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 149 GCTCCTCCTCCTCGTCTCCGCCACTTACGTTGTCTACACACTAAAGCTTATCTCAAACTC 208
Query 179 ACGTGCCTGTCACGTGGAGCCATTCTCCGATGTTGTTCGTCGTCTCAACGACATTGTGAA 238
|||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 209 ACGTGCTTGTCAAGTGGAGCCATTCTCCGCCGTTGTTCGTCGTCTCAACGACATTGTCAA 268
Query 239 CTCATCTCAGCCATTTATTCTCTTCCACGCAAATCAAACCGCCGTAATCAAATCTTAcac 298
||||||||| || || |||||||||||| |||||||||| || ||||||||||| ||| |
Sbjct 269 CTCATCTCAACCGTTGATTCTCTTCCACACAAATCAAACGGCTGTAATCAAATCATACGC 328
Query 299 ctctccaccaccttcaccacttccaccaccaccTCCGCCGCCGCAAACCGGGTTCCAACA 358
||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 329 CTCTCCACCACCTTCACCA---CCACCACCACCTCCGCCACCGCAAACCGGTTTCCAACA 385
Query 359 CGTGGTTTTCGGAATCGCCGCGTCGGCGAGACTATGGAAACAGAGGAAAGAGTACATCAA 418
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 386 CGTGGTTTTCGGTATCGCCGCGTCGGCAAGACTATGGAAACAGAGAAAAGAGTACATCAA 445
Query 419 GATTTGGTATAAACCAAACCAAATGCGTGGTTACGTCTGGTTAGAAAAACCGGTTA---A 475
||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||| |
Sbjct 446 GATTTGGTACAAACCAAACCAAATGCGTAGTTATGTCTGGTTAGAAAAACCAGTTACTGA 505
Query 476 GGAAGAAGAAGAAGACGAAATTAGCCTCCCGCCGGTGAAAATCTCCGGCGATACATCGAA 535
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 AGAAGACGAAGAAGACGAAATTAGCCTCCCGCCGGTGAAAATCTCCGGCGATACATCGAA 565
Query 536 GTTTCCGTATAAAAACAAACAAGGACACAGATCGGCGATTAGAATTTCAAGAATTGTTAC 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 566 GTTTCCGTATAAAAACAAACAAGGACACAGATCGGCGATTAGAATTTCAAGAATCGTTAC 625
Query 596 GGAGACACTCAAATTAGGACTCAAAGATGTGAGATGGTTTGTTATGGGAGACGATGATAC 655
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 626 GGAGACACTTAAATTAGGACTCAAAGATGTGAGATGGTTCGTTATGGGAGACGATGATAC 685
Query 656 AGTCTTCGTCGCCGAGAATTTGATCAGAGTTTTGAGAAAATACGATCATAATCAGATGTA 715
|||||| |||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 686 AGTCTTTGTCGCCGAGAATCTAATCAGAGTTTTGAGAAAATACGATCATAATCAAATGTA 745
Query 716 TTACATCGGAAGTTTATCGGAAAGTCATCTTCAGAACATTTACTTCTCTTATGGAATGGC 775
||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 746 TTACATCGGCAGTTTATCGGAGAGTCATCTTCAGAACATTTATTTCTCTTATGGAATGGC 805
Query 776 TTACGGCGGCGGAGGATTTGCTATAAGTTATCCATTAGCGGTGGCGCTGAGCAAAATGCA 835
||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 806 TTATGGCGGTGGAGGATTTGCTATAAGTTATCCATTAGCGGTGGCTTTGAGCAAAATGCA 865
Query 836 AGATCGGTGTATCAAAAGGTATCCGGCGTTGTACGGTTCCGATGATCGGATGCAAGCTTG 895
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 AGATCGGTGTATTAAAAGGTATCCGGCGTTGTACGGTTCCGATGATCGGATGCAAGCTTG 925
Query 896 CATGGCTGAACTCGGTGTTCCACTCACTAAAGAACTCGGTTTTCACCAGTACGATGTGTA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 CATGGCTGAACTCGGTGTTCCACTCACTAAAGAACTCGGTTTTCACCAGTACGATGTGTA 985
Query 956 TGGCAATCTCTTTGGATTACTAGCGGCTCACCCGGTGGCTCCATTGGTTACGCTTCATCA 1015
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 986 TGGCAATCTCTTTGGATTACTAGCGGCTCACCCGGTGGCTCCACTGGTTACGCTTCATCA 1045
Query 1016 CCTCGACGTGGTTGAACCGATCTTTCCTAA-CATGACACGTGTTGATGCCTTGAAGCATT 1074
|||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1046 CCTCGACGTGGTCGAACCGAT-TTTCCCAAACATGACACGTGTTGATGCCTTGAAGCATC 1104
Query 1075 TACAAGTCCCGGCAAAGCTAGACTCTGCTGGACTTATGCAACAGTCGATATGCTATGACA 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TACAAGTCCCGGCAAAGCTAGACTCTGCTGGACTTATGCAACAGTCGATATGCTATGACA 1164
Query 1135 AACGTCGTAAATGGACTGTATCCGTCTCTTGGGGCTTTGCGGTTCAGATTTTTCGCGGAA 1194
|||| || ||||||||||| |||||||||||||| || |||||||||||||| |||||||
Sbjct 1165 AACGCCGCAAATGGACTGTTTCCGTCTCTTGGGGATTCGCGGTTCAGATTTTCCGCGGAA 1224
Query 1195 TCTTTTCTGCTCGAGAGATTGAAATGCCGTCGAGAACCTTCTTAAATTGGTATCGACGGG 1254
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1225 TCTTTTCGGCTCGAGAGATTGAAATGCCGTCGAGAACTTTCTTAAATTGGTATCGACGGG 1284
Query 1255 CGGATTACACGGCATACGCTTTCAACACCCGACCCGTGAGTCGACATCCATGCCAGAAAC 1314
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1285 CGGATTACACGGCATACGCTTTCAACACCCGACCCGTGAGTCGTCATCCGTGCCAGAAAC 1344
Query 1315 CGTTTGTGTTCTATATGACATCATCCAGTGTTCATCCGGTGACAAATATGACAGTGAGCC 1374
||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||
Sbjct 1345 CGTTTGTGTTCTATATGACATCAACCAGAGTTCATCGGGTGACAAATATGACAGTGAGCC 1404
Query 1375 GTTATGAAATCCACCATGTGGCTCATCCCGAGTGTCGGTGGAAGATGGCTAATCCCGGCG 1434
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1405 GTTATGAAATCCACCGCGTGGCTCATCCCGAGTGTCGGTGGAAGATGGCTAATCCCAGCG 1464
Query 1435 ACATTAAGACGGTCATTGTTTACAAGAAACCGGACCCTCACCTTTGGGACAGGTCTCCTA 1494
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1465 ACATTAAGACAGTCATTGTTTACAAGAAACCGGACCCTCATCTTTGGGACAGGTCTCCTA 1524
Query 1495 GAAGAAATTGTTGTAGGGTGAAATCAAAGAAGAACAATACTTTGGAGATTAGTGTTGCAG 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 GAAGAAATTGTTGTAGGGTGAAATCAAAGAAGAACAATACTTTGGAGATTAGTGTTGCAG 1584
Query 1555 TTTGCAAAGAAGGTGAAGTGGTTGAAGTCGTGTAATAATATTCATGTTAAATTTT 1609
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1585 TTTGCAAAGAAGGTGAAGTGGTTGAAGTCGTGTAATAATATTCATGGTAAATTTT 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79467462735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5