BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947574
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41450.1 | Symbols: | RING/U-box superfamily protein | chr5... 494 8e-139
AT5G41440.1 | Symbols: | RING/U-box superfamily protein | chr5... 424 1e-117
AT5G22044.1 | Symbols: | pseudogene of zinc finger (C3HC4-type... 231 7e-60
> AT5G41450.1 | Symbols: | RING/U-box superfamily protein | chr5:16588600-16589094
REVERSE LENGTH=495
Length=495
Score = 494 bits (267), Expect = 8e-139
Identities = 345/382 (90%), Gaps = 8/382 (2%)
Strand=Plus/Plus
Query 117 TTTGATAGAA-TTTGCATAGAGCCTATTCAGCAACCTCCTACGGAAATAGCTCTTGAGAC 175
||| ||| || |||||||||| | || |||||||||||||||||||||||||| ||||||
Sbjct 101 TTT-ATA-AACTTTGCATAGATCTTAGTCAGCAACCTCCTACGGAAATAGCTCGTGAGAC 158
Query 176 TCACCAAAATTCTCATCCACTACC---TCAGTC-TCAAGAAGACATTGAGACCGGACATG 231
||||||||||||||||||| ||| |||| | |||| ||||||||||||| |||||||
Sbjct 159 ACACCAAAATTCTCATCCACCACCTGATCAG-CTTCAACAAGACATTGAGACTGGACATG 217
Query 232 TAATGCTGCCTCAGCCTCAACAAGACATAACAATCGGATGTATGACGTGGATCAATGAAA 291
||| ||||||||||||||||||| |||| || |||||| |||||| |||||| ||||||
Sbjct 218 TAACGCTGCCTCAGCCTCAACAAAACATTGCAGTCGGATATATGACATGGATCCATGAAA 277
Query 292 CGACAGTTTTAGAGTTTAAAGATATCGAAGAAGGGTCCAATAAGATTTGTTGTCCGATAT 351
||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||| ||||
Sbjct 278 CGACAATTTTAGAGTTTAAAGATATAAAAGAAGGATCCAATAAGATTTTTTGTCCAATAT 337
Query 352 GTCTTGAAGAGTTTGAAGATGGCCATGAGATTATTCGTATAAATATGTGTAGACATGTTT 411
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 338 GTCTTGAAGAGTTTGAAGATGGCCATGAGATAATTCGTATAAATATGTGTAGACATGTTT 397
Query 412 TTCATCGTTTTTGTATTGATTATTGGCTCAATCAGAATCGAAGCTGTCCGAATTGTCGAT 471
|||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||||
Sbjct 398 TTCATCGTTTTTGTATTGATCCTTGGCTCAATCAGAATCTAACCTGCCCGAATTGTCGAT 457
Query 472 GCTCCCTTAATGCAAGAAAGAG 493
||||||||| ||||||||||||
Sbjct 458 GCTCCCTTACTGCAAGAAAGAG 479
> AT5G41440.1 | Symbols: | RING/U-box superfamily protein | chr5:16587235-16587609
REVERSE LENGTH=375
Length=375
Score = 424 bits (229), Expect = 1e-117
Identities = 328/373 (88%), Gaps = 17/373 (5%)
Strand=Plus/Plus
Query 513 CTGCCAGTGATAATGATCATAGGGACCGGATATATAGTTTACTACACCATAATAGGCCTT 572
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 4 CTGCCAGTGATAATGATCATAGGGACCGGATATATCGTTTACTACACCATAGTAGGCTTT 63
Query 573 T---TAATCGT-TGTCACCATTCTATCGTGCT---G--CT-GTACTCAT-----T-CTCC 616
| ||||||| | ||| | |||||| ||||| | || | ||| | | ||||
Sbjct 64 TGGGTAATCGTAT-TCATCGTTCTATTGTGCTGCAGAACTCCTCCTCCTCCCCCTCCTCC 122
Query 617 GCCTCCTCCTCGACAAGTTATTGAAACCGGGCATATTCCAGCGATCAATGAAACCGCGGT 676
|||||||||| ||||| |||||||| || |||||||||||||||||| ||||| ||||
Sbjct 123 TCCTCCTCCTCAACAAGACATTGAAACTGGACATATTCCAGCGATCAATAAAACCACGGT 182
Query 677 CGAGACGATCATAAAGCTTGAAAATGTCGAAGAAGGAGATGGGGGTTGCTGTTCAATTTG 736
|||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 183 CGAGACGATCATAAAGGTTGAAGATGTCGAAGAAGGAGATGAGGGTTGCTGTTCAATTTG 242
Query 737 TCTAGAAGAGTTCAAGATTGGCCACGAGCTTATGTGCATAAAGAAGTGTAGGCATGTTTT 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TCTAGAAGAGTTCAAGATTGGCCACGAGCTTATGTGCATAAAGAAGTGTAGGCATGTTTT 302
Query 797 TCATCGCTTTTGTATTCATTCTTGGTTTGATACAAATCGGAACTGTCCAATTTGTCGTTG 856
||||||||||||||| | ||||||| ||||| | ||||| || ||||| |||||||||||
Sbjct 303 TCATCGCTTTTGTATGCTTTCTTGGATTGATGCGAATCGAAATTGTCCTATTTGTCGTTG 362
Query 857 TTCTGTTGATTGA 869
|||||||||||||
Sbjct 363 TTCTGTTGATTGA 375
> AT5G22044.1 | Symbols: | pseudogene of zinc finger (C3HC4-type
RING finger) protein | chr5:7299989-7300324 FORWARD LENGTH=336
Length=336
Score = 231 bits (125), Expect = 7e-60
Identities = 257/317 (81%), Gaps = 23/317 (7%)
Strand=Plus/Plus
Query 164 AGCTCTTGAGACTCACCAAAATTC-TCATCCACTACCTCAGTCTCAAGAAGACATTGAGA 222
||| ||||||||| ||||||| | |||||||| ||||| ||||||| |||||| ||| |
Sbjct 28 AGC-CTTGAGACTAACCAAAA-CCATCATCCACAACCTCCGTCTCAACAAGACACTGAAA 85
Query 223 CCGGACATGTAATGCTGC-C-T-CAGCCTCAACAAGACAT-AACAATCGGATGTATGACG 278
|||||||| ||| | || | | || ||||||||||||| || || || || |||||
Sbjct 86 CCGGACATCTAA--CGGCACTTGAAG-CTCAACAAGACATCAA-AACCGAATATATGA-- 139
Query 279 TGGATCAATGAAACGACAGTTTTAGAGTTTAAAGATATCG-A-A-GAAGGGTCCAATAAG 335
|| || || || || | |||||||||||| ||||| | | ||||| | || ||
Sbjct 140 TGCAT--AT-TAA-GA-A--AATAGAGTTTAAAGGTATCGAAGAGGAAGGATTTGATGAG 192
Query 336 ATTTGTTGTCCGATATGTCTTGAAGAGTTTGAAGATGGCCATGAGATTATTCGTATAAAT 395
||||||||| | || ||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 193 ATTTGTTGTTCAATTTGTCTTGAAGAATTTGAAGATGGCCATGATATTATCCGTATAAAT 252
Query 396 ATGTGTAGACATGTTTTTCATCGTTTTTGTATTGATTATTGGCTCAATCAGAATCGAAGC 455
||||||||||||||||||||||| |||||||||| | |||||| || ||||||| ||||
Sbjct 253 ATGTGTAGACATGTTTTTCATCGCCTTTGTATTGACTCTTGGCTGAAACAGAATCAAAGC 312
Query 456 TGTCCGAATTGTCGATG 472
||||||||||| |||||
Sbjct 313 TGTCCGAATTGCCGATG 329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5