BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947575
Length=481
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41430.1 | Symbols: | RING/U-box superfamily protein | chr5... 409 1e-113
AT5G22044.1 | Symbols: | pseudogene of zinc finger (C3HC4-type... 174 6e-43
> AT5G41430.1 | Symbols: | RING/U-box superfamily protein | chr5:16586119-16586604
REVERSE LENGTH=486
Length=486
Score = 409 bits (221), Expect = 1e-113
Identities = 369/434 (85%), Gaps = 35/434 (8%)
Strand=Plus/Plus
Query 21 ATGATAGAATCTATGCCCTTGCTAGATTTGT-TATCAATAATGTTCTTTCCATGGGCCAT 79
||||||||||||||||||| ||| ||| ||| | ||||| | | || || || |||||||
Sbjct 1 ATGATAGAATCTATGCCCTCGCTGGATGTGTCT-TCAAT-A-G-TCGTTACAGGGGCCAT 56
Query 80 TGTACTA-TCCTTCTTCATCTTATATAT-ATGTATCATCTTTTACAACAAATATATTCAA 137
| || || | ||| |||| ||||||||| || | | | || || |||||| |||||||||
Sbjct 57 TTTAATAGT-CTTGTTCACCTTATATATCATCTCTGA-CTCTTGCAACAAGTATATTCAA 114
Query 138 CCTCCTACGGAATTAGCTCTTGAGACTCATCAAAACTCTCATCCCTCA------------ 185
|||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 115 CCTCCTACGGAACTAGCTCTTGAGACACATCAAAACTCTCATCCCTCACTTCCTCCTCTG 174
Query 186 -CT-T--C-CT-CCTCTGCCTCTGCCTCAGCCT-----T-TGCCTCAGCAAGACATTGAA 233
|| | | || ||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 175 CCTGTGCCTCTGCCTCTGCCTCTGCCTCAGCCTCAGCCTCAGCCTCAGCAAGACAATGAA 234
Query 234 ACCGGACATCTAGCGCCGCTTCAGTCTCAACTAGAATATAAAACCGGTTATAGGGCA-CG 292
|||||||||||| ||||||||| ||||||||||||| ||||| ||||||||||||| |
Sbjct 235 ACCGGACATCTAATGCCGCTTCATTCTCAACTAGAATTTAAAATCGGTTATAGGGCATC- 293
Query 293 GATCGAGGAAATGGAGTTTAAAGATATTGAAAAAGAAGGGTTTGATGAGATTTGTTGTTC 352
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 294 GATCGAGGAAATGGAGTTTAAAGATATTGAAAAAGAAGGATTTGATGAGATTGGTTGTTC 353
Query 353 AATTTGTCTTGAAGAGTTAAAAGATGGCCATGAGATTATCCGTATCAAGAAGTGTAAACA 412
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||
Sbjct 354 AATTTGTCTTGAAGAGTTAGAAGATGGCCATGAGATTATCCGTATAAAGAAGTGTAGACA 413
Query 413 TGTTTTCCATCGTT 426
||||||||||||||
Sbjct 414 TGTTTTCCATCGTT 427
> AT5G22044.1 | Symbols: | pseudogene of zinc finger (C3HC4-type
RING finger) protein | chr5:7299989-7300324 FORWARD LENGTH=336
Length=336
Score = 174 bits (94), Expect = 6e-43
Identities = 174/212 (82%), Gaps = 8/212 (4%)
Strand=Plus/Plus
Query 217 CTCAGCAAGACATTGAAACCGGACATCTAGCGCCGCTT-CAGTCTCAACTAGAATAT-AA 274
|||| ||||||| |||||||||||||||| || | ||| || |||||| || | || ||
Sbjct 68 CTCAACAAGACACTGAAACCGGACATCTAACGGCACTTGAAG-CTCAACAAG-ACATCAA 125
Query 275 AACCGGTTATA-G-GGCACGGATCGAGGAAATGGAGTTTAAAGATATTGAAAAAGAAGGG 332
||||| |||| | ||| || || |||| |||||||||| ||| ||| | |||||
Sbjct 126 AACCGAATATATGATGCA--TATTAAGAAAATAGAGTTTAAAGGTATCGAAGAGGAAGGA 183
Query 333 TTTGATGAGATTTGTTGTTCAATTTGTCTTGAAGAGTTAAAAGATGGCCATGAGATTATC 392
||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 184 TTTGATGAGATTTGTTGTTCAATTTGTCTTGAAGAATTTGAAGATGGCCATGATATTATC 243
Query 393 CGTATCAAGAAGTGTAAACATGTTTTCCATCG 424
||||| || | ||||| ||||||||| |||||
Sbjct 244 CGTATAAATATGTGTAGACATGTTTTTCATCG 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22906771032
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5