BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947578
Length=572
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41400.1 | Symbols: | RING/U-box superfamily protein | chr5... 876 0.0
AT1G63840.1 | Symbols: | RING/U-box superfamily protein | chr1... 206 2e-52
> AT5G41400.1 | Symbols: | RING/U-box superfamily protein | chr5:16569377-16570177
REVERSE LENGTH=801
Length=801
Score = 876 bits (474), Expect = 0.0
Identities = 535/564 (95%), Gaps = 5/564 (1%)
Strand=Plus/Plus
Query 1 TCTCTCTCTAACGGCGAAGCCATGGGTTATCCGGTGGGCTACACTGAGCTCCTCCTCCCA 60
||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 43 TCTCTTTCTAGCGGCGAAGCCATGGGTTATCCGGTGGGGTACACTGAGCTCCTCCTCCCA 102
Query 61 AGAATCTTCCTTCACTTACTCTCTCTCTTAGGCTTAATCCGAACACTCATAGACACTGGT 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 103 AGAATCTTCCTTCACTTACTCTCTCTCTTAGGCTTAATACGAACACTCATAGACACGGGT 162
Query 121 TTTCGGATATTGGGTCTACCCGACTTCCTCGAATCCGACCCAGTTTCATCGTCATCATCA 180
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 163 TTTCGGATATTGGGTCTACCCGACTTTCTCGAATCCGACCCGGTTTCATCGTCATCGTCA 222
Query 181 TGGCCGGAACCACCGTCTATGTCCTCGGCGGCGCATCATCACCAAGAAAGCTCATTTTTC 240
|||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 223 TGGCTGGAACCACCGTATATGTCCACGGCGGCGCATCATCACCAAGAAAGCTCATTTTTC 282
Query 241 TTTCCAGTAGCGGCGAGGCTAGCAGGAGAAATCTTACCCGTTATCAGATTCTCGGAGCTA 300
|| ||||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 283 TTCCCAGTGGCGGCGAGGCTAGCTGGAGAAATCTTGCCCGTCATCAGATTCTCGGAGCTA 342
Query 301 AAC-CGACCCGGATTCGGATCCGGATCAGATTGCTGCGCGGTGTGCCTCCACGAGTTCGA 359
| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 343 A-CTCGACCCGGATTCGGATCCGGATCCGATTGCTGCGCGGTGTGCCTCCACGAGTTCGA 401
Query 360 GAACGAAGACGAGATCCGACGGCTGACGAATTGCCAACACATATTTCATCGGAGCTGTTT 419
|||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 402 GAACGATGACGAGATCCGACGGCTGACGAATTGTCAACACATATTTCACCGGAGCTGTTT 461
Query 420 GGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTAGGACGCCGTTTAT 479
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 462 AGACCGTTGGATGATGGGTTATAATCAGATGACGTGTCCACTTTGTAGAACGCCGTTTAT 521
Query 480 TCCTGATGAGTTACAAGTTGCTTTTAACCAACGAGTTTGGTCTGAATCTGA-CATTCTCG 538
| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 522 TTCTGATGAGTTACAAGTTGCTTTTAACCAACGAGTTTGGTCTGAATCTGAAC-TTCTCG 580
Query 539 CAGAATCAACTTAGAATCTT-CTT 561
||||||||| |||||||||| |||
Sbjct 581 CAGAATCAAATTAGAATCTTTCTT 604
> AT1G63840.1 | Symbols: | RING/U-box superfamily protein | chr1:23689697-23690807
REVERSE LENGTH=1111
Length=1111
Score = 206 bits (111), Expect = 2e-52
Identities = 192/229 (84%), Gaps = 14/229 (6%)
Strand=Plus/Plus
Query 259 CTAGCAGGAGAAATCTTACCCGTT-ATCAGATTCTCGGAGCTAAACCGACCCGGATTCGG 317
||||| ||||| || ||||| ||| || |||||||||| |||||||| |||||
Sbjct 518 CTAGCCGGAGAGATGTTACCGGTTGTTC-GATTCTCGGATATAAACCGA-CCGGA----- 570
Query 318 ATCCGGATCAGATTGCTGCGCGGTGTGCCTCCACGAGTTCGAGAACGAAGACGAGATCCG 377
|||| | || || ||||| ||||| ||| |||| ||||||||||| |||||||||||
Sbjct 571 ATCC-G---AG--TGTTGCGCAGTGTGTCTCTACGATTTCGAGAACGACGACGAGATCCG 624
Query 378 ACGGCTGACGAATTGCCAACACATATTTCATCGGAGCTGTTTGGACCGTTGGATGATGGG 437
||||||||||||||| | ||| |||||||||||| | |||||||||||||||||||||||
Sbjct 625 ACGGCTGACGAATTGTCGACATATATTTCATCGGGGATGTTTGGACCGTTGGATGATGGG 684
Query 438 TTATAATCAGATGACGTGTCCACTTTGTAGGACGCCGTTTATTCCTGAT 486
|||||||||||||||||||||||||||| | || | |||||| ||||||
Sbjct 685 TTATAATCAGATGACGTGTCCACTTTGTCGTACACAGTTTATACCTGAT 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27478078409
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5