BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947583
Length=277
Score E
Sequences producing significant alignments: (Bits) Value
AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 | chr1:237428... 370 4e-102
> AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 | chr1:23742842-23745374
REVERSE LENGTH=1656
Length=1656
Score = 370 bits (200), Expect = 4e-102
Identities = 232/248 (94%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 5 TTCAGGACTCTCATCGATGAAGTTCTTCTCCGATCAAAACCTCTCTTACGCTGATATTCT 64
||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 35 TTCAGGACTATCATCGATGAAGTTCTTCTCCGATCAACACCTCTCTTACGCTGACATTCT 94
Query 65 TCTCCCTCACGAAGCTCGTGCTAGAATCGAAGTCTCTGTTCTCAATCTCCTTAGAATTTT 124
||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 95 TCTTCCTCACGAAGCTCGTGCTAGAATCGAAGTTTCTGTTCTCAATCTCCTCCGAATTTT 154
Query 125 AAATTCCCCTGATCCAGCTATCTCTGATCTCTCCCTGATCAATAGGAAGAGAAGCAATAG 184
|| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 155 GAACTCCCCAGATCCAGCTATCTCCGATCTCTCTCTGATCAATAGGAAGAGAAGCAATAG 214
Query 185 CTGTATAAACCAAGGGATACTCACAGATGTTTCATATATCTTCCTCTCTACTTCATTTAC 244
||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 215 TTGTATAAACAAAGGGATACTCACAGATGTTTCATATATATTCCTCTCTACTTCGTTTAC 274
Query 245 TAAGAGTT 252
||||||||
Sbjct 275 TAAGAGTT 282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12717740497
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5