BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947587

Length=487
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G41450.1 | Symbols:  | RING/U-box superfamily protein | chr5...   209    2e-53


> AT5G41450.1 | Symbols:  | RING/U-box superfamily protein | chr5:16588600-16589094 
REVERSE LENGTH=495
Length=495

 Score =  209 bits (113),  Expect = 2e-53
 Identities = 264/335 (79%), Gaps = 18/335 (5%)
 Strand=Plus/Plus

Query  138  CAACCTCCTACGG-AATCAGCTCTTGATACTCACCAAAA----C--CCACTTCCTTCTCT  190
            ||||||||||||| ||| ||||| ||| || ||||||||    |  ||||  |||  || 
Sbjct  130  CAACCTCCTACGGAAAT-AGCTCGTGAGACACACCAAAATTCTCATCCACCACCTGATCA  188

Query  191  GCCTCAACAAGACATTGAGTCTGGACATCTAACGCCACCTCAGTCTCAACAAGACATCAA  250
            || |||||||||||||||| |||||||| ||||||  |||||| |||||||| ||||   
Sbjct  189  GCTTCAACAAGACATTGAGACTGGACATGTAACGCTGCCTCAGCCTCAACAAAACATTGC  248

Query  251  AACCGGATATATGA-GTCGGATCGAGGAAATG--GAGTTTAAAGATATCATCA-A-AGAA  305
            |  |||||||||||  | ||||| | |||| |   | |||| || | | |  | | | ||
Sbjct  249  AGTCGGATATATGACAT-GGATCCATGAAACGACAATTTTAGAG-TTTAAAGATATAAAA  306

Query  306  GAAGGATTTGGTGATGAGATTTGTTGTTCAATTTTTCTTGAAGAGTTTGAAGATGGCCAT  365
            ||||||  |    || |||||| |||| |||| | |||||||||||||||||||||||||
Sbjct  307  GAAGGA--T-CCAATAAGATTTTTTGTCCAATATGTCTTGAAGAGTTTGAAGATGGCCAT  363

Query  366  GCCATTGTCCGTATAAACAAGTGTAGACATGTTTTTCATCGTTTTTGTATTGTTTCTTGG  425
            |  ||  | |||||||| | |||||||||||||||||||||||||||||||| | |||||
Sbjct  364  GAGATAATTCGTATAAATATGTGTAGACATGTTTTTCATCGTTTTTGTATTGATCCTTGG  423

Query  426  CTGAAACAGAAACGAACCTGCCCGAATTGTCGATG  460
            || || ||||| | |||||||||||||||||||||
Sbjct  424  CTCAATCAGAATCTAACCTGCCCGAATTGTCGATG  458



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23208175914


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5