BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947595
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: RNAse P, ... 966 0.0
> AT5G41270.1 | Symbols: | CONTAINS InterPro DOMAIN/s: RNAse P,
Rpr2/Rpp21 subunit (InterPro:IPR007175); Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:16507709-16508879
FORWARD LENGTH=931
Length=931
Score = 966 bits (523), Expect = 0.0
Identities = 659/721 (91%), Gaps = 24/721 (3%)
Strand=Plus/Plus
Query 20 GATGGGGAAACGAGGGCCTAAGAAGCTTACAAACACTC----A--AGGAGGACCTAATCT 73
|||||| |||||||| || ||||||||||||||||||| | |||||||||||||||
Sbjct 88 GATGGGCAAACGAGGACCGAAGAAGCTTACAAACACTCAAGGAGGAGGAGGACCTAATCT 147
Query 74 CAAATCTGTACTAAGACATGAGCACTTGAAGAATCTCGCTCTATGGTCTTCCACCGGAGA 133
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 148 CAAATCTGTACTGAGACATGAGCACTTGAAGAATCTCGCTCTCTGGTCTTCCACCGGAGA 207
Query 134 TACTCCGATACCGTCTCTTGCTTCATTATTCGGTCGACGTCTCGCTGCCGACACTGAAAC 193
|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 208 TACTCCTATCCCGTCTCTTGCTTCATTACTCGGTCGACGTCTCGCTGCCGACACTGAATC 267
Query 194 CACGGGAATCGCTACTGATCCCGATCACGTCTCTTGTCAGAGGTGTGAGACTATTCTTAA 253
||| |||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 268 CACCGGAATCACTACTGATCCCGATCTCGTCTCTTGTCAAAGGTGTGAGACCATTCTTAA 327
Query 254 GCCTGGATTCAATTGCAATGTTAGAATTGAGAAGGTTTCTGCTAAT---AAGAAGAAACG 310
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 328 GCCTGGATTCAATTGCAATGTTAGAATAGAGAAGGTTTCTGCTAATGTGAAGAAGAAACG 387
Query 311 TAACAGGTGCAAGAATTCTAACA---TCTGTTTGCCTCAGAACAATGTAGTTTACAATTG 367
||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||
Sbjct 388 TAATAGGTGCAAGAAGTCTAACAACATCTGTTTCCCTCAGAACAATGTAGTTTACCATTG 447
Query 368 CAATTTCTGTTCTCACCGGAAC-TTGAAGAGAGGTACTGCCAAAGGTCAGATGAAAGAGA 426
|||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 448 CAATTTCTGTTCTCACCGGAACCTT-AAGAGAGGTACTGCTAAAGGTCAGATGAAAGAGC 506
Query 427 TTTACCCGTTCAAGCCGAAGACTGCTCGTTCTTTGCGTCCTAAGATCAAGAAAGAGATGA 486
||||||||||||||||||| || |||||||| | |||||| |||||||||||||||||||
Sbjct 507 TTTACCCGTTCAAGCCGAAAACCGCTCGTTCGTCGCGTCCGAAGATCAAGAAAGAGATGA 566
Query 487 CGGTGCCTCAAGAAATCCAAAGTAGCATGCTTTGTTCGCCGGAGAGAAGTGTGAAAGATC 546
|| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 567 CGATGCCTCAAGAAATCCAAAGTAACATGCTTTCTTCACCGGAGAGAAGTGTGAAAGATC 626
Query 547 AGGTGGAGGAGAATAGTGTTGGGGATACACCGAAGCCAATGATGCTTACTTTGGAGAGGG 606
||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 627 AGGTGGAGGAGAAGAGTGTTGGGGATACACCGAAGCCGATGATGCTTACATTGGAGAGGG 686
Query 607 ATAGGAGAATACGGAAATCCAAAAGTAAGAAACCGA-TCGATCC-CGGAAGCAGCGTTCC 664
||||||||||||| ||| |||||||||||||||||| | || || | || || |||||
Sbjct 687 ATAGGAGAATACGAAAACCCAAAAGTAAGAAACCGAGT-GAACCTC--AA--AGTGTTCC 741
Query 665 TGAGAAAACTGTTGGTGGATCAAATAAGAGGAAGAGAAAATCA--T-GGACAAGTATGAA 721
||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 742 TGAGAAAACAGTTGGTGGATCAAATAAGAGGAAGAGAAAATCACCTTGGACAAGTATGAA 801
Query 722 G 722
|
Sbjct 802 G 802
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36520224869
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5