BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947601
Length=2033
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41180.1 | Symbols: | leucine-rich repeat transmembrane pro... 3221 0.0
> AT5G41180.1 | Symbols: | leucine-rich repeat transmembrane protein
kinase family protein | chr5:16483871-16487426 FORWARD
LENGTH=2367
Length=2367
Score = 3221 bits (1744), Expect = 0.0
Identities = 1944/2041 (95%), Gaps = 11/2041 (1%)
Strand=Plus/Plus
Query 1 TTTGAGCTAGGA-GAAAAAAGAATGAGACTTTACTTATCTTCAGCTATGCAGCTTACTCT 59
||||||| |||| |||||||||||||||||||||||||||||| | ||||||||| ||||
Sbjct 153 TTTGAGCAAGGAGGAAAAAAGAATGAGACTTTACTTATCTTCAACGATGCAGCTTTCTCT 212
Query 60 TGTGAGTCTTGTTTTAGGGTTCCTCTTTGTTTCCTGTGACGCTTTTGCCTCTAAAGAAGT 119
| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 213 TATGAGTCTTGTTCTAGGGTTCCTCTTTGTTTCCTGTGACGCGTTTGCCTCTAAAGAAGT 272
Query 120 TGAAGCACTTAGTAGATTCAAGGAAGCTATCTATAAGGACCCATTGCTAGTTATGTCTAA 179
||||||| |||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 273 TGAAGCAGTTAGAAGATTCAAGGAAGCCATTTATAAGGACCCATTGCTAGTTATGTCTAA 332
Query 180 TTGGAATGTCCCCAATTTAAGTCCTTGTGATTGGAATGGCATTAAATGTTCTCCATCTAA 239
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 333 TTGGAATGTCCCCAATTTGAGTCCTTGTGATTGGAATGGCATTAAATGTTCTCCATCTAA 392
Query 240 GGATCATGTTATCAAGATAAATATATCGGCGACATCGATGAGAGGGTTTCTTGTGGCAGA 299
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 393 GGATCACATTATCAAGATAAATATATCGGGGACATCGATGAGAGGGTTTCTTGTGCCAGA 452
Query 300 AATTGGTCAGATAACCTACTTGCAAGAACTGATCTTGCGTGGGAAC-TTGCTAATGGGGA 358
| ||||||| |||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 453 ACTTGGTCAAATAACCTACTTGCAAGAACTGATCCTGCGTGGGAACATT-CTAATGGGGA 511
Query 359 CAATACCAAAGGAGATAGGAAAATTAGAGAAACTCAAGATCTTAGACCTGGGAAACAATC 418
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 512 CAATACCAAAGGAGATAGGAAAGTTAAAGAAACTCAAGATCTTAGACCTGGGAAACAATC 571
Query 419 ATTTGACAGGACCGATTCCTGCTGAGATCGGGAAATTGTCAAGCATTAGGACAATAAACC 478
||||||||||||||||||| || |||||||||||||||||||| |||| |||||||||||
Sbjct 572 ATTTGACAGGACCGATTCCAGCAGAGATCGGGAAATTGTCAAGGATTAAGACAATAAACC 631
Query 479 TTCAGTCCAATGGTTTAATAGGAAAGTTACCACCAGAGATTGGAAACTTGAAGCACCTTA 538
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 632 TTCAGTCCAATGGTTTAATAGGAAAGTTACCTCCAGAGATTGGAAACTTGAAGCACCTTA 691
Query 539 AAGAACTTCTTATTGACCGGAATAGGCTTCGAGGAAGTATTCCTATTGCCGCAAAAACAT 598
||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||
Sbjct 692 AAGAACTTCTTATTGGCAGGAATAGGCTTCGAGGAAGTATTCCTATTGCCGCGAAAACAT 751
Query 599 CAAAAAAGTATGCTTCAAATCTAAGTGCAAACATCAGTGGTTTGTGCAAGTCTTCTCTAT 658
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 752 CAAAAAAGTATGCTTCAAATCCAAGTGCAAACATCAGTGGTTTGTGCAAGTCTTCTCTAT 811
Query 659 TGAAAGTGGCAGATTTCTCTTACAACTTTTTCGAGGGAAGAGTTCCGCA-TTGCTTGGAT 717
| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 812 TTAAAGTGGCAGATTTCTCTTACAACTTTTTCGAGGGAAGAGTTCCG-AGTTGCTTGGAT 870
Query 718 TACCTTCCAAGAACGAGCTTTCAAGGAAACTGCATGAAAACTGA-GGATGTTAAGCAGAG 776
||||| |||| |||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 871 TACCTCCCAATAACGAGCTTTCAAGGAAACTGCATGAAAAC-CATGGATGTTAAGCAGAG 929
Query 777 ACCTCTTTCAGAATGTGCTCACTTAGCTGCAACCGTGGCCAAGAAGAAGCATCGCGCATC 836
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 930 ACCTCTTTCAGAATGTGCTCGCTTAGCTGTAACCGTGGCCAAGAAGAAGCATCGAGCATC 989
Query 837 ---ACCTATATGGCTTCGGAATTTTGAGATAGTCACGGGATCATCAGTTGGTTTGCTCTT 893
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 990 GAGACAAACATGGCTTCGGAATTTTGAGATAGTCACGGGATCATCAGTTGGCTTGCTCTT 1049
Query 894 TCTAGTTATAATTTTCTCTGCATGTAGCTTGTGCAACATAAAGCGCTCTCTCATCGTTCC 953
|||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1050 TCTAGTCGTAATGTTCTCTGCATGTAGCTTGTGCAAAATAAAGCGCTCTCTCATCGTTCC 1109
Query 954 CTGGAAGAAATCTGCAAGTGAAAAGGAGAAGTTCACGGTCTACGTTGATTCTGAAATGCT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CTGGAAGAAATCTGCAAGTGAAAAGGAGAAGTTCACGGTCTACGTTGATTCTGAAATGCT 1169
Query 1014 GAAGGATGTTTCAAGATGTACAAGACAAGAGCTAGAAGTGGCGTGTGAAGACTTCAGCAA 1073
||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 1170 GAAGGATGTTTCAAGATATACAAGACAAGAGCTAGAAGTAGCATGTGAAGACTTCAGCAA 1229
Query 1074 CATCATTGATTCTTGTGCAGATAGTCAGATTTACAAAGGAACGATCAAAGGCGGGACTGA 1133
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1230 CATCATTGATTCTAGTGCAGAGAGTCAGATTTACAAAGGAACGATCAAAGGCGGGACTGA 1289
Query 1134 GATCGCGGTGATCTCTCTCTGCGTTAAAGAAGAAGATTGGACCGGATATCTTGAGCTTAA 1193
||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1290 GATCGCGGTTATCTCTCTCTGCGTTAAAGAAGAAAATTGGACTGGATATCTTGAGCTTAA 1349
Query 1194 TTTCCAGAGAGAGGTTGCGGATTTGGCTAGATTAAACCATGAGAATGCGGGGAAATTACT 1253
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1350 TTTCCAGAGAGAGGTTGCGGCTTTGGCTAGATTAAACCATGAGAATGCGGGGAAATTACT 1409
Query 1254 GGGATTCTGTAAAGAGAGTACACCGTTCACAAGAATGCTTGTGTTTGAGTATGCATCAAA 1313
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 GGGATACTGTAAAGAGAGTACACCGTTCACAAGAATGCTTGTGTTTGAGTATGCATCAAA 1469
Query 1314 CGGGACACTATACGACCATCTCCACTATGGGGACGGGAGTTTAGCATCGTGGGCGAAACG 1373
||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||
Sbjct 1470 CGGGACACTATACGACCATCTCCACTATGCGGACGGGAGTTTAGTATCGTGGGCAAAACG 1529
Query 1374 CATGAAAATCGTTATAGGCATCGGACGTGGTCTCAAGTACCTTCATACTGAACTCGATCC 1433
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1530 CATGAAAATTGTTATAGGCATCGCACGTGGTCTCAAGTACCTTCATACTGAACTCCATCC 1589
Query 1434 TCCATTTACAGTCTCTGAGTTGAGCTCAACTGCAGTGTATCTCACTGAAGATTTTACTCC 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 TCCATTTACAGTCTCTGAGTTGAGCTCAACTGCAGTGTATCTCACTGAAGATTTTACTCC 1649
Query 1494 CAAACTGGTTGATTTCGAATGCTGGAAGACGATTCAGGTGAGATCAGAGAAGAACCTGAA 1553
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1650 CAAACTGGTTGATTTCGAATGCTGGAAGATTATTCAGGTGAGATCAGAGAAGAACCTGAA 1709
Query 1554 GAATATCTGTAATGAAGGAGCTATATGTGTACTTCCCAATGCAATGGAGCACCGAGATCT 1613
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 1710 GAATATCTGTAATGAAGGAGCAATATGTGTACTTCCCAATGCAATGGAACACCGAGATAT 1769
Query 1614 AGACTTACAAGGGAATATCTACTCATTTGGCATACTTTTGCTGGAAATTGTAAGCGGAAG 1673
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 GGATTTACAAGGGAATATCTACTCATTTGGCATACTTTTGCTGGAAATTGTAAGCGGAAG 1829
Query 1674 ATCTTCTTATTGCCAAGACAGAGGTTGCTTGGTTGAATGGGTAAGGGAGAAAAACCTTGG 1733
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 ACCTTCTTATTGCCAAGACAGAGGTTGCTTGGTTGAATGGGTAAGGGAGAAAAACCTTGG 1889
Query 1734 TGTACCAGATGTGGTGGCTAGCTTGGTGGATCCTGAGCTCAAGCATTTCAACCAAAAAGA 1793
|| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1890 TGCACCAGATGTGATGGCTAGCTTGGTGGATCCTGAGCTCAAGCATTTCAAGCAAAAAGA 1949
Query 1794 ACTTGAGGCAGTATGTGAAGTGGCAAGCCAATGTCTGAACTTGGACCAGAATGAAAAAGA 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 ACTTGAGGCAGTATGTGAAGTGGCAAGCCAATGTCTGAACTTGGACCAGAATGAAAAAGA 2009
Query 1854 CAAGAATAAGCTTTCTTGTTCGATTCAAGCGCTTTGTGAGACACTAGAGAGTAGAATCAC 1913
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2010 CAAGGATAAGCTTTCTTGTTCGATTCAAGCGCTTTGTGAGACACTAGAGAGTAGAATCAC 2069
Query 1914 GGTGTCCATTTCTGCAGAACTCAATTCGTCTTCTCTGGCATGGGCCGAGCTCGCACTGGC 1973
|||||||||||||||||| |||| |||||||||||||| ||||||||||| || |||||
Sbjct 2070 TGTGTCCATTTCTGCAGAATTCAAATCGTCTTCTCTGGCGTGGGCCGAGCTAGCGCTGGC 2129
Query 1974 CTCGCCTTCTAATGAAGAAGAAGATGAAAGGAGTAAATAAA-TTGGCAATGTAGTTATGA 2032
|||||||||||| ||||| || ||||| ||||||||||||| ||||| ||| |||||||
Sbjct 2130 CTCGCCTTCTAACGAAGACGACGATGATAGGAGTAAATAAAATTGGCTTTGTTGTTATGA 2189
Query 2033 C 2033
|
Sbjct 2190 C 2190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100752493815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5