BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947602
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2488 0.0
AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 874 0.0
AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 339 7e-92
AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 327 1e-88
> AT5G41170.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:16478486-16480584 REVERSE LENGTH=2099
Length=2099
Score = 2488 bits (1347), Expect = 0.0
Identities = 1537/1629 (94%), Gaps = 12/1629 (1%)
Strand=Plus/Plus
Query 1 TTTCGTCTGGGA-TTGCGTTAATGGCGATGAGATTTCTTCATCTTCACCGAGA---TCTT 56
|||||||||||| ||||||||||||||||||||||| |||| ||||||||| | ||||
Sbjct 121 TTTCGTCTGGGATTTGCGTTAATGGCGATGAGATTTTTTCAACTTCACCGAAATCGTCTT 180
Query 57 GTAAAAGGTAATTCTGGGAAAGCTCTCTCCTTTAGCCGCCTTTTAGGTCTTAGTTTCTGG 116
|| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GTGAAAGGTAATTCTGGAAAAGCTCTCTCCTTTAGCCGCCTTTTAGATCTTAGTTTCTGG 240
Query 117 GTTCGAGCTTTTTGTAATTACCGAGAGATTTTGAGAAATGGACTTCACTCTCTTCAGTTT 176
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GTTCGAGCTTTTTGTAATTACCGAGAGATTTTGAGAAATGGTCTTCACTCTCTTCAGTTT 300
Query 177 AATGAAGCTCTTGATTTGTTCAGTCACATGGTTGAGTCTCGTCCTCTTCCTTCAATTATC 236
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 AATGAAGCTCTCGATTTGTTCACTCACATGGTTGAGTCTCGTCCTCTTCCTTCAATTATC 360
Query 237 GATTTCACT-AGATTATTGAATGTTATTGCCAAAATGAAGAAGTTTGATGTTGTGATCAA 295
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATTTCACTAAG-TTATTGAATGTTATTGCCAAAATGAAGAAGTTTGATGTTGTGATCAA 419
Query 296 TCTGTGCAAGCATTTGCAAATAATGGGAGTTTCGA-ATGATCTCTATACTTGTAATCTTT 354
||| ||| | ||| |||| |||||||||||||| | |||||||||||||||| |||||||
Sbjct 420 TCTCTGCGACCATCTGCAGATAATGGGAGTTTC-ACATGATCTCTATACTTGCAATCTTT 478
Query 355 TGATGAATTGTTTCTGTCAATCTTCTCAGCCTTGTCTTGCTTCTTCTTTTCTTGGGAAGC 414
|||||||||||||||| |||||||||||||||| |||||| || |||||||||||||||
Sbjct 479 TGATGAATTGTTTCTGCCAATCTTCTCAGCCTTATCTTGCCTCATCTTTTCTTGGGAAGA 538
Query 415 TGATGAAACTTGGTTTTGAGCCTGACATTTTCACGTTTACTTCTCTGATCAATGGGTTCT 474
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 539 TGATGAAACTTGGTTTTGAGCCTGATATTGTCACGTTTACTTCTCTGATCAATGGGTTCT 598
Query 475 GTCTCGGGAATAGAATTGAGGAGGCCATGTCTATGGTGAATCAGATGGTGGAGATGGGGA 534
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 GTCTCGGGAATAGAATGGAGGAGGCTATGTCTATGGTGAATCAGATGGTGGAGATGGGGA 658
Query 535 TTAAACCCGATGTTGTAATGTATACAACAATCATCGATAGTCTTTGTAAAAACGGACATG 594
||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||
Sbjct 659 TTAAACCTGATGTTGTAATGTATACAACAATCATTGATAGTCTTTGCAAAAACGGGCATG 718
Query 595 TGGATAACGCGTTGAGCCTTTTCAATCAAATGGAAAACTATGGGATTAGACCGGATGTTG 654
|| || ||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 719 TGAATTACGCGTTGAGCCTTTTCGATCAAATGGAAAACTACGGGATTAGACCGGATGTTG 778
Query 655 TTATGTACACCTCTCTCGTCATCGGTCTTTGTAACTCTGGTAGATGGAGAGATGCTGATC 714
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 779 TTATGTACACCTCTCTCGTGAACGGTCTTTGTAACTCTGGTAGATGGAGAGATGCTGATT 838
Query 715 CATTGCTCAGGGGTATGATGAAGAGGAAAATCAAAGCTGATGTAATCACTTTCAATGCAT 774
||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 CATTGCTGAGGGGTATGACGAAGAGGAAAATCAAACCTGATGTAATCACTTTCAATGCAT 898
Query 775 TGATCGATGCGTTTGTGAAAGAAGGAAAGCTTTTGGATGCTAAAGAATTGTACAATGAGA 834
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 899 TGATCGATGCGTTTGTGAAAGAAGGAAAGTTTTTGGATGCTGAAGAATTGTACAATGAGA 958
Query 835 TGATTCGAATGTCTATAGCTCCTAATATTTTCACTTATACTTCATTGATCAATGGGCTTT 894
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 959 TGATTCGTATGTCTATAGCTCCTAATATTTTCACCTATACTTCATTGATCAATGGGTTTT 1018
Query 895 GCATGGAGGGTCGCT-TAGATGAGGCCAGACAAATGTTTCATTTGATGGAAACCAAGGGT 953
||||||| ||| | | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 GCATGGAAGGTTG-TGTAGATGAGGCCAGACAAATGTTTTATTTGATGGAAACCAAGGGT 1077
Query 954 TGTTTTCCAGACGTAGTGGCTTATACCTCTCTCATAAATGGGTTTTACAAGTGTAAGAAG 1013
||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 1078 TGTTTTCCAGATGTAGTGGCTTATACTTCTCTCATAAACGGGTTTTGCAAGTGTAAGAAG 1137
Query 1014 GTAGAGGATGCGATGAAAATCTTCTACGAGATGTCCCAAAAAGGATTGACTGGGAACACA 1073
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GTAGATGATGCGATGAAAATCTTCTACGAGATGTCCCAAAAAGGATTGACTGGGAACACT 1197
Query 1074 ATCACTTACACTACTCTTATCCAAGGTTTTGGTCTAGTGGGCAAACCTAATGTCGCCCAA 1133
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1198 ATCACTTACACTACTCTTATCCAAGGTTTTGGTCAAGTGGGCAAACCTAATGTCGCCCAA 1257
Query 1134 GAAGTTTTCAGTCATATGGTTTCTCGTGGCGTGCCTCCCAATATTAGGACTTACAATGTA 1193
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1258 GAAGTTTTTAGTCATATGGTTTCTCGTGGCGTGCCTCCCAATATTAGGACCTATAATGTT 1317
Query 1194 TTGTTACATTGTCTATGTTATAACGGGAAGGTAAAGAAAGCGTTGATGATATTTGAGGAT 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TTGTTACATTGTCTATGTTATAACGGGAAGGTAAAGAAAGCGTTGATGATATTTGAGGAT 1377
Query 1254 ATGCAAAAGAGAGAAATAGATGGTGT-GCCTCCCAATATTAGGACTTACAATGTATTGTT 1312
||||||||||||||||| |||||||| || |||||||||| |||||||||| || |||||
Sbjct 1378 ATGCAAAAGAGAGAAATGGATGGTGTCGC-TCCCAATATTTGGACTTACAACGTCTTGTT 1436
Query 1313 ACATTGTCTATGTTATAATGGGAAGCTAGAGAAAGTGTTGATGGTGTTCGAGGATATGCA 1372
|||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1437 ACATGGTCTATGTTATAATGGGAAGCTAGAGAAAGCCTTGATGGTATTCGAGGATATGCG 1496
Query 1373 AAAGAGAGATATGGATATTGGTATTATTACATATACAATCATCATTCAAGGGATGTGCAA 1432
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1497 AAAGAGAGAGATGGATATTGGAATTATTACATATACCATCATCATTCAAGGGATGTGCAA 1556
Query 1433 GGCCGGTAAAGTGAAAGATGCTCTTAATTTATTTTGTAGCCTCCCTTCCAAAGGAGTGAA 1492
||| |||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 1557 GGCTGGTAAAGTGAAAAATGCTGTTAATTTATTTTGTAGCCTTCCTTCAAAAGGAGTGAA 1616
Query 1493 GCCAAATGTTGTAACATACACTACAATGATATCAGGATTGTTTAGGGAAGGGTTAATGCT 1552
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1617 GCCTAATGTTGTAACATATACTACAATGATATCAGGATTGTTTAGGGAAGGGTTAAAGCA 1676
Query 1553 TGAAGCTCATGTGTTGTTTAGAAAAATGAAAGAAGATGGGGTTTCATAATTAGGTGACAC 1612
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1677 TGAAGCTCATGTGTTGTTTAGGAAAATGAAAGAAGATGGGGTTTCATAATTAGGTGACAC 1736
Query 1613 TATAGCATA 1621
||||||||
Sbjct 1737 CATAGCATA 1745
> AT3G16710.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:5690020-5691543 FORWARD LENGTH=1524
Length=1524
Score = 874 bits (473), Expect = 0.0
Identities = 965/1196 (81%), Gaps = 60/1196 (5%)
Strand=Plus/Plus
Query 109 GTTTCTGGGTTCGAGCTTTTTGTAATTACCGAGAGATTTTGAGAAATGGACTTCACTCTC 168
|||||||| |||||||||||| || ||||||| ||||||||||||| || |||||| ||
Sbjct 125 GTTTCTGGATTCGAGCTTTTTCTAGTTACCGAAAGATTTTGAGAAACGGTCTTCACAATC 184
Query 169 TTCAGTTTAATGAAGCTCTTGATTTGTTCAGTCACATGGTTGAGTCTCGTCCTCTTCCTT 228
||||||||||||| |||||||||||||||| || |||||| | |||||||| |||||||
Sbjct 185 TTCAGTTTAATGATGCTCTTGATTTGTTCACTCGTATGGTTCACTCTCGTCCCCTTCCTT 244
Query 229 CAATTATCGATTTCACTAGATTATTGAATGTTATTGCCAAA-ATGAAGAAGTT-TGATGT 286
||||||||||||||||||||||||||| ||||||||| ||| ||||| | | | ||||||
Sbjct 245 CAATTATCGATTTCACTAGATTATTGAGTGTTATTGC-AAAGATGAATA-GATATGATGT 302
Query 287 TGTGAT--CAATCTGTGCAAGCATTTGCAAATAATGGGAGTTTCGAA-TGATCTCTATAC 343
|||||| | ||| || | ||| ||||||| |||| | ||| | | ||| | |||
Sbjct 303 TGTGATTTCTCTCTTTG-A-GCAAATGCAAATCCTGGG-GATTCCACCTCTTCTTTGTAC 359
Query 344 TTGTAATCTT-TTGATGAATTGT-TTCTGTCAATCTTCTCAGCCTTGTCTTGCTTCTT-C 400
||| ||| | || ||| ||||| || |||| ||||||||||||||||| |||||| | |
Sbjct 360 TTGCAATATCGTT-ATGCATTGTGTT-TGTCTATCTTCTCAGCCTTGTCGTGCTTCGTGC 417
Query 401 TTTTCTTGGGAAGCTGATGAAACTTGGTTTTGAGCCTGACATTT-TCACGTTTACTTCTC 459
||| ||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 418 TTT-CTTGGGAAGATGATGAAACTTGGTTTTGAGCCTGAC-TTAGTCACGTTTACTTCTC 475
Query 460 TGATCAATGGGTT-CTGTC-TCGGGAATAGAATTGAGGAGGCCAT-GTCTATGGT-GAAT 515
|| | ||||| || ||||| | || |||||||||||||| || || | || || | || |
Sbjct 476 TGCTTAATGG-TTACTGTCATTGG-AATAGAATTGAGGATGCTATAG-CTCTGTTTGA-T 531
Query 516 CAGATGGTGGAGA-TGGGGATT-AAACCCGATGTTGTAATGTATACAACAATCAT-CGAT 572
||||| ||| || |||| ||| ||||| ||||||| | || || ||| | || || |
Sbjct 532 CAGATTTTGG-GAATGGG-ATTTAAACCTAATGTTGTGACATACACCACATTGATTCGCT 589
Query 573 AGTCTTTGTAAAAACGGACATGTGGATAACGCGTTG-AGCCTTTTCAATCAAATGGAAAA 631
|||||||||||||| ||||| || || ||||| || ||| |||| || || |||| |
Sbjct 590 -GTCTTTGTAAAAACCGACATTTGAATCACGCGGTGGAGCTTTTT-AACCAGATGGGGA- 646
Query 632 CTA-TGGGATTAGACCGGATGTTGTTATGTACACCTCTCTCGTCATCGGTCTTTGT-A-A 688
||| ||||| ||||||| ||||||||| |||| | |||| || | ||||||||| | |
Sbjct 647 CTAATGGGAGTAGACCGAATGTTGTTACCTACAACGCTCTTGTTACCGGTCTTTGCGAGA 706
Query 689 CTCTGGTAGATGGAGAGATGCTGATC--CATTGCTCAGGGGTATGATGAAGAGGAAAATC 746
| |||||||||| | ||||||| | | || || |||| |||||||||||||| |||
Sbjct 707 -T-TGGTAGATGGGGTGATGCTGCTTGGC-TT-CTGAGGGATATGATGAAGAGGAGAATT 762
Query 747 AAAGCTGATGTAATCACTTTCAATGCATTGATCGATGCGTTTGTGAAAGAAGGAAAGCTT 806
|| || ||||||||||||||| ||| |||||||||||||||||||||| || ||||||
Sbjct 763 GAACCTAATGTAATCACTTTCACTGCGTTGATCGATGCGTTTGTGAAAGTGGGGAAGCTT 822
Query 807 TTGGATGCTAAAGAATTGTACAATGAGATGATTCGAATGTCTATAGC-TCCTAATATTTT 865
|||| ||||||||| ||||||||| |||||| | ||||||| | | |||| || ||||
Sbjct 823 ATGGAGGCTAAAGAACTGTACAATGTGATGATCCAAATGTCTGT-GTATCCTGATGTTTT 881
Query 866 CACTTATACTTCATTGATCAATGGGCTTTGCATGGAGGGTCGCTTAGATGAGGCCAGACA 925
|||||| |||| |||||||||||||||||||| | |||| |||||||||||| || ||
Sbjct 882 CACTTACGGTTCACTGATCAATGGGCTTTGCATGTATGGTCTCTTAGATGAGGCTAGGCA 941
Query 926 AATGTTTCATTTGATGGAAACCAAGGGTTGTTTTCCAGAC-GTAGTGGCTTATACCT-CT 983
||||||| |||||||||||| || ||||| | || || | |||| |||||| | ||
Sbjct 942 AATGTTTTATTTGATGGAAAGGAATGGTTGCTACCC-GAATGAAGTGATTTATAC-TACT 999
Query 984 CTCATAAATGGGTTTTACAAGTGTAAGAAGG-TAGAGGATGCGATGAAAATCTTCTACGA 1042
|||||| |||| |||| ||||| ||| |||| ||||||| | ||||||||||||||| ||
Sbjct 1000 CTCATACATGGATTTTGCAAGTCTAA-AAGGGTAGAGGACGGGATGAAAATCTTCTATGA 1058
Query 1043 GATGTCCCAAAAAGGATTGACTGGGAA-CACAATCACTTACACTACTCTTATCCAAGGTT 1101
|||||| || |||||| | | | | || ||||||||||||||| ||||||||| ||||
Sbjct 1059 GATGTCGCAGAAAGGAGT-AGTTGCAAACACAATCACTTACACCGTTCTTATCCAGGGTT 1117
Query 1102 -TTGGTCTAGTGGGCAAACCTAATGTCGCCCAAGAAGTTTTCAGTCATATG-GTTTCTCG 1159
||| ||||||||||| |||| |||| |||||||||||||||| ||| ||| ||| ||||
Sbjct 1118 ATTG-TCTAGTGGGCAGACCTGATGTTGCCCAAGAAGTTTTCAATCAGATGAGTT-CTCG 1175
Query 1160 TGGCGTGCCTCCCA-ATATTAGGACTTACAATGTATTGTTACATTGTCTATGTTATAACG 1218
| | | |||||| | |||||||||| ||||| || |||||| || |||| |||| ||| |
Sbjct 1176 TCGTGCGCCTCC-AGATATTAGGACATACAACGTTTTGTTAGATGGTCTTTGTTGTAATG 1234
Query 1219 GGAAGGTAAAGAAAGCGTTGATGATATTTGAGGATATGCAAAAGAGAGAAATAGAT 1274
|||| ||| |||| || ||||||||||| || | |||| |||||||| || |||
Sbjct 1235 GGAAAGTAGAGAAGGCATTGATGATATTCGAATACATGCGGAAGAGAGAGATGGAT 1290
> AT1G62590.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:23176930-23179248 REVERSE LENGTH=2212
Length=2212
Score = 339 bits (183), Expect = 7e-92
Identities = 561/737 (76%), Gaps = 52/737 (7%)
Strand=Plus/Plus
Query 561 ACAATCATCGATAGTCTTTGTAAAAACGGACATGTGGATAACGCGTTGAGCCTTTTCAAT 620
|||||||| |||||||| || ||| | ||||||||||| | ||| | | ||| |||||
Sbjct 843 ACAATCATTGATAGTCTCTGCAAATATAGACATGTGGATGATGCGCTCAACCTATTCAAA 902
Query 621 CAAATGGAAAACTATGGGATTAGACCGGATGTTGTTATGTACACCTCTCTCGTCA-TCGG 679
||||||||| | | || |||||||| ||||||||| |||| ||| ||| | | | |
Sbjct 903 GAAATGGAAACCAAAGGAATTAGACCAAATGTTGTTACCTACAGCTCCCTCATAAGT-TG 961
Query 680 TCTTTGTAACTCTGGTAGATGGAGAGATG-CTGATCCATTGCTCAGGGGTATGA-TGAAG 737
||||||| | ||| |||||||| |||| || || | | || || | ||||| || ||
Sbjct 962 CCTTTGTAGTTATGGAAGATGGAGTGATGCCT-CTCAACTACTGAGTGATATGATTG-AG 1019
Query 738 AGGAAAATCAAAGCTGATGTAATCACTTTCAATGCATTGATCGATGCGTTTGTGAAAGAA 797
| ||||||||| || || || |||| |||||||||||||||||||||||||||||||||
Sbjct 1020 AAGAAAATCAACCCTAATTTAGTCACGTTCAATGCATTGATCGATGCGTTTGTGAAAGAA 1079
Query 798 GGAAAGCTTT-TGGATGCTAAAGAA-TTGTACAATGAGATGATTCGAATG-TCTATAGCT 854
|||||| ||| | || ||| | ||| |||||| |||| ||||| | || | ||||||| |
Sbjct 1080 GGAAAG-TTTGTAGAGGCTGA-GAAATTGTACGATGACATGAT-CAAAAGGTCTATAGAT 1136
Query 855 CCTAATATTTTCACTTATACTTCATTGATCAATGGGCTT-TGCATGGAGGGTCG-CTTAG 912
||| ||||||||||||| | ||||||| |||| ||| || || ||| | | ||| || ||
Sbjct 1137 CCTGATATTTTCACTTACAATTCATTGGTCAACGGG-TTCTGTATGCATGATCGTCT-AG 1194
Query 913 ATGAGGCCA-GACAAATGTTTCATTTGATGGAAACCAAGGGTTGTTTTCCAGACGTAGTG 971
| |||||| | || |||||| | || |||| | ||||| ||||| ||||| |||||
Sbjct 1195 ACAAGGCCAAG-CAGATGTTTGAGTTCATGGTTAGCAAGGACTGTTTCCCAGATGTAGTT 1253
Query 972 GCTTATACCT-CTCTCATAAATGGG-TTTTACAAGTGTAAGA-AGGTAGAGGATGCG-AT 1027
| |||| | |||||||||| ||| |||| ||||| ||||| || |||| |||| | |
Sbjct 1254 ACATATAA-TACTCTCATAAA-GGGATTTTGCAAGTCTAAGAGAG-TAGAAGATG-GTAC 1309
Query 1028 GAAAATCTTCTACGAGATGTCCCAAAAAGGATTGACTGG-GAACACAATCACTTACACTA 1086
| || ||||| ||||||||| || | ||||||| ||| || ||| |||||||||| |
Sbjct 1310 GGAACTCTTCCGCGAGATGTCTCATAGAGGATTGGTTGGCGAT-ACAGTCACTTACACCA 1368
Query 1087 CTCTTATCCAAGG--TTTTGGTC-T-AGTGGGCAAACC-TAATG-TCGCCCAAGAAG-TT 1139
||||||||||||| |||| || | | ||| | | | | || | |||||| ||| ||
Sbjct 1369 CTCTTATCCAAGGGCTTTT--TCATGA-TGG-CGA-CTGTGATAAT-GCCCAA-AAGGTT 1421
Query 1140 TTCAGTCATATGGTTTCTCG-TGGCGTGCCTCCCAATATTAGGACTTACA--ATGTATTG 1196
|||| || ||||||||| | ||| || ||||| |||| | ||| |||| || | |||
Sbjct 1422 TTCAAACAGATGGTTTCT-GATGGTGTACCTCCTGATATAATGACATACAGCAT-T-TTG 1478
Query 1197 TTACATTGTCTATGTTATAACGGGAAGGTAAAGAAAGCGTTG-ATGATATTT-GAGGATA 1254
||| || | || ||| ||||||||||| || ||||||| ||| | | | ||| || |||
Sbjct 1479 TTAGATGGACTCTGTAATAACGGGAAGCTAGAGAAAGCATTGGAGG-T-TTTCGACTATA 1536
Query 1255 TGCAAAAGAGAGAAATA 1271
|||||||||| || |||
Sbjct 1537 TGCAAAAGAGTGAGATA 1553
> AT1G63330.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:23489840-23491519 FORWARD LENGTH=1680
Length=1680
Score = 327 bits (177), Expect = 1e-88
Identities = 560/738 (76%), Gaps = 54/738 (7%)
Strand=Plus/Plus
Query 561 ACAATCATCGATAGTCTTTGTAAAAACGGACATGTGGATAACGCGTTGAGCCTTTTCAAT 620
||||||||||||||||| || ||| | ||||||||||| | || | | ||| |||||
Sbjct 568 ACAATCATCGATAGTCTCTGCAAATATAGACATGTGGATGATGCACTCAACCTATTCAAA 627
Query 621 CAAATGGAAAACTATGGGATTAGACCGGATGTTGTTATGTACACCTCTCTCGTCA-TCGG 679
||||||||| | | || |||||||| ||||||||| |||| ||| ||| | | | |
Sbjct 628 GAAATGGAAACCAAAGGAATTAGACCAAATGTTGTTACCTACAGCTCCCTCATAAGT-TG 686
Query 680 TCTTTGTAACTCTGGTAGATGGAGAGATG-CTGATCCATTGCTCAGGGGTATGA-TGAAG 737
||||||| | ||| |||||||| |||| || || | | || || | ||||| || ||
Sbjct 687 CCTTTGTAGTTATGGAAGATGGAGTGATGCCT-CTCAACTACTGAGTGATATGATTG-AG 744
Query 738 AGGAAAATCAAAGCTGATGTAATCACTTTCAATGCATTGATCGATGCGTTTGTGAAAGAA 797
| ||||||||| || || || |||| |||||||||||||||||||||||||||||||||
Sbjct 745 AAGAAAATCAACCCTAATTTAGTCACGTTCAATGCATTGATCGATGCGTTTGTGAAAGAA 804
Query 798 GGAAAGCTTT-TGGATGCTAAAGAA-TTGTACAATGAGATGATTCGAATG-TCTATAGCT 854
|||||| ||| | || ||| | ||| ||| || |||| ||||| | || | ||||||| |
Sbjct 805 GGAAAG-TTTGTAGAGGCTGA-GAAATTGCACGATGACATGAT-CAAAAGGTCTATAGAT 861
Query 855 CCTAATATTTTCACTTATACTTCATTGATCAATGGGCTT-TGCATGGAGGGTCG-CTTAG 912
||| ||||||||||||| | |||||||||||| ||| || || ||| | | ||| || ||
Sbjct 862 CCTGATATTTTCACTTACAATTCATTGATCAACGGG-TTCTGTATGCATGATCGTCT-AG 919
Query 913 ATGAGGCCA-GACAAATGTTTCATTTGATGGAAACCAAGGGTTGTTTTCCAGACGTAG-T 970
| |||||| | || |||||| | || |||| | ||||| ||||| ||||| ||| |
Sbjct 920 ACAAGGCCAAG-CAGATGTTTGAGTTCATGGTTAGCAAGGACTGTTTCCCAGATTTAGAT 978
Query 971 GGCTTATACCT-CTCTCATAAATGGG-TTTTACAAGTGTAAGA-AGGTAGAGGATGCG-A 1026
| |||| | |||||||||| ||| |||| ||||| ||||| || |||| |||| | |
Sbjct 979 A-CATATAA-TACTCTCATAAA-GGGATTTTGCAAGTCTAAGAGAG-TAGAAGATG-GTA 1033
Query 1027 TGAAAATCTTCTACGAGATGTCCCAAAAAGGATTGACTGG-GAACACAATCACTTACACT 1085
| || ||||| ||||||||| || | ||||||| ||| || ||| ||||||||||
Sbjct 1034 CGGAACTCTTCCGCGAGATGTCTCATAGAGGATTGGTTGGCGAT-ACAGTCACTTACACC 1092
Query 1086 ACTCTTATCCAAGG--TTTTGGTC-T-AGTGGGCAAACC-TAATG-TCGCCCAAGAAG-T 1138
|||||||||||||| |||| || | | ||| | | | | || | |||||| ||| |
Sbjct 1093 ACTCTTATCCAAGGGCTTTT--TCATGA-TGG-CGA-CTGTGATAAT-GCCCAA-AAGGT 1145
Query 1139 TTTCAGTCATATGGTTTCTCG-TGGCGTGCCTCCCAATATTAGGACTTACA--ATGTATT 1195
||||| || ||||||||| | ||| || ||||| |||| | ||| |||| || | ||
Sbjct 1146 TTTCAAACAGATGGTTTCT-GATGGTGTACCTCCTGATATAATGACATACAGCAT-T-TT 1202
Query 1196 GTTACATTGTCTATGTTATAACGGGAAGGTAAAGAAAGCGTTG-ATGATATTT-GAGGAT 1253
|||| || | || ||| ||||||||||| || ||||||| ||| | | | ||| || ||
Sbjct 1203 GTTAGATGGACTCTGTAATAACGGGAAGCTAGAGAAAGCATTGGAGG-T-TTTCGACTAT 1260
Query 1254 ATGCAAAAGAGAGAAATA 1271
||||||||||| || |||
Sbjct 1261 ATGCAAAAGAGTGAGATA 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80069869275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5