BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947621 Length=1802 Score E Sequences producing significant alignments: (Bits) Value AT5G41100.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2887 0.0 > AT5G41100.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G26910.2); Has 1503 Blast hits to 1197 proteins in 220 species: Archae - 4; Bacteria - 108; Metazoa - 481; Fungi - 318; Plants - 186; Viruses - 39; Other Eukaryotes - 367 (source: NCBI BLink). | chr5:16447222-16450881 FORWARD LENGTH=2239 Length=2239 Score = 2887 bits (1563), Expect = 0.0 Identities = 1726/1806 (96%), Gaps = 5/1806 (0%) Strand=Plus/Plus Query 1 TTGTTTTGTTCGA-C-GGAAATATGATGAAAGCTTCGTTTGGAAGGTTAAGAAGATTCGC 58 |||||| |||| | | ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 186 TTGTTTAGTTCTATCTGGAGATATGATGAAAGCTTCGTTTGGAAGGTTAAGAAGATTCGC 245 Query 59 ATTACCCAAATCCGATGCGATTGATATAGGAGAGCTTTTTCCCACTGCGCAAATTGAAGG 118 |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 246 ATTACCCAAAGCCGATGCGATTGATATAGGAGAGCTTTTTCCCACTGCACAAATTGAAGG 305 Query 119 TCTTGCTCGAGCCGCCAAGGATATGCAAGACATGAGAGAGGGTTATGATCGATTACTTGA 178 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| || Sbjct 306 TCTTGCTCGAGCCGCCAAGGATATGCAAGATATGAGAGAGGGTTATGATAGATTACTCGA 365 Query 179 AGTAGCTGCTGCGATGGCTAATAGCGCATACGAGTTCTCTGAATCATTGGGGGAAATGGG 238 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 366 AGTAGCTGCTGCTATGGCTAATAGCGCATATGAGTTCTCTGAATCATTGGGGGAAATGGG 425 Query 239 TTCATGCTTGGAGCAAATCGCGCCTCATAATGATCAAGAAAGTGGTGGAATTCTTCTAAT 298 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 426 CTCATGCTTGGAGCAAATCGCGCCTCATAATGATCAAGAAAGTGGTGGAATTCTTCTAAT 485 Query 299 GTTAGGTAAAGTTCAGTTTGAGCTTAAGAAACTCGTCGACACTTATCGTTCTCAAATATT 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 GTTAGGTAAAGTTCAGTTTGAGCTTAAGAAACTCGTCGACACTTATCGTTCTCAAATATT 545 Query 359 CAAGACCATTACACGACCTTCAGAGTCACTTCTCAGTGACCTTAGAACTGTTGAGGATAT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 546 CAAGACCATTACACGACCTTCAGAGTCACTTCTCAGTGACCTTAGAACTGTTGAGGATAT 605 Query 419 GAAGCAACAATGTGAAGAAAAGAGAGACGTTGTTAAGCACATGATAATGGAGCATGTGAA 478 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 606 GAAGCAACAATGTGAAGAAAAGAGAGACGTTGTTAAGCACATGCTAATGGAGCATGTGAA 665 Query 479 AGACAAGGTACAAATTAAAGGCAGTAAAGGGGAGAGACTTATTCGCCGTCAGTTAGAGAC 538 ||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 666 AGACAAGGTACAAGTTAAAGGCACTAAAGGGGAGAGACTTATTCGCCGTCAGCTAGAGAC 725 Query 539 TGCTCGTGATGAGCTACAAGATGAGGCTACTTTGTGCATTTTCCGATTGAAATCTCTCAA 598 |||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 726 TGCTCGCGATGAGCTACAAGATGAGGCGACTCTGTGCATTTTCCGATTGAAATCTCTCAA 785 Query 599 GGAAGGACAAGCTCGAAGTCTCCTCACACAAGCAGCCCGCCACCACACTGCTCAGATGCA 658 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 786 GGAAGGGCAAGCTCGAAGTCTCCTCACACAAGCAGCCCGCCACCACACTGCTCAGATGCA 845 Query 659 TATGTTCTTTGCTGGTCTGAAATCGCTTGAGGCAGTAGAGCAACAAGTCAAAATTGCTGC 718 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 846 TATGTTCTTTGCTGGTCTGAAATCGCTTGAGGCAGTAGAGCAACACGTCAGAATTGCTGC 905 Query 719 AGGCAGACAACACATCGACTGTGAGCTCTCTGATCATGGGAACGAAATGGATTGCAGTGA 778 || ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| Sbjct 906 AGATAGACAACACATCGACTGTGTGCTCTCTGATCCCGGGAACGAAATGGATTGTAGTGA 965 Query 779 GGATAATGATGATGATGACCGACTTGTTAACAGAGATGGAGAACTCAGTTTTGACTACAT 838 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 966 GGATAATGATGATGATGACCGACTTGTTAATAGAGATGGAGAACTCAGTTTTGACTACAT 1025 Query 839 AACAAGTGAGCAGAGAGTAGAAGTTATATCTACACCACATGGATCGATGAAGATGGATGA 898 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1026 AACAAGTGAGCAGAGAGTAGAAGTTATATCTACACCTCATGGATCGATGAAGATGGATGA 1085 Query 899 TACAGATCTCTCGTTTCAACGCCCTTCACCTGCAGGATCAGCAACAGTAAATGCAGATCC 958 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1086 CACAGATCTCTCGTTTCAACGCCCTTCACCTGCAGGATCAGCAACAGTAAATGCAGACCC 1145 Query 959 TAGAGAAGAGCACCCAATTTCAAACCGAGATCGCAGAACGAGCAGCCATTCAGCGCCTCT 1018 ||||||||||||| || |||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1146 TAGAGAAGAGCACTCAGTTTCAAACCGTGATCGCAGAACGAGCAGCCATTCAGCACCTCT 1205 Query 1019 GTTTCCGGAAAAGAAATCTGATTTAGCAGATAAATTGATGAGGCAAATGACTCCATCTGC 1078 ||||||||| |||||| ||||||||||||||| || ||||||||| |||||||||||||| Sbjct 1206 GTTTCCGGATAAGAAAGCTGATTTAGCAGATAGATCGATGAGGCAGATGACTCCATCTGC 1265 Query 1079 AAATGCTTACATATTACCAACTCCGGTCGATTCAAAGTCCTCACCAATCTTCACAAAACC 1138 |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 1266 AAATGCTTACATATTACCAACTCCCGTCGACTCAAAGTCCTCACCAATCTTCACAAAACC 1325 Query 1139 TGTCACCCAAACAAACCACAGTGCAAACTTATGGCATTCATCTCCACTAGAACCGATAAA 1198 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1326 TGTCACCCAGACAAACCACAGTGCAAACTTATGGCATTCATCTCCACTAGAACCAATAAA 1385 Query 1199 AACTGCTCGTAAAGATGTGGAAAGTAACCAATATTCCCGTCTTCCCCGTCCTTCAGAACA 1258 ||| || | |||||||| |||||| |||| ||||||||||||||||||||||||||||| Sbjct 1386 AACCGCCCATAAAGATGCGGAAAGCAACCTCTATTCCCGTCTTCCCCGTCCTTCAGAACA 1445 Query 1259 TGCATTCTCTGGACCACTCAAGCCATCCTCAACCCGTCTTCCAGTACCGGTTGCAGTTCA 1318 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1446 CGCATTTTCTGGACCACTCAAGCCATCCTCAACCCGTCTTCCAGTACCAGTTGCAGTTCA 1505 Query 1319 GGCTCAGTCATCTTCTCCAAGAATCTCTCCTACCGCTTCACCTCCGCTTGCTTCTTCTCC 1378 |||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| || Sbjct 1506 GGCTCAGTCATCTTCTCCCAGAATATCTCCTACCGCTTCACCGCCTCTTGCTTCTTCCCC 1565 Query 1379 ACGGATCAACGAACTCCATGAGCTTCCAAGACCACCGGGTCAATTTGCACCGCCACGACG 1438 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1566 ACGAATCAACGAACTCCATGAGCTTCCAAGACCACCAGGTCAATTTGCACCGCCACGACG 1625 Query 1439 CTCGAAATCTCCTGGTTTGGTCGGTCATTCGGCTCCATTAACGGCTTGGAATCAAGAAAG 1498 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1626 CTCGAAATCTCCTGGTTTGGTTGGTCATTCGGCTCCATTAACGGCTTGGAATCAAGAAAG 1685 Query 1499 AAGCAATGTAGTTGTGTCAACCAACATTGTAGCATCACCACTTCCGGTTCCACCGCTTGT 1558 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1686 AAGCAATGTAGTAGTGTCAACCAACATTGTAGCATCACCACTTCCGGTTCCACCGCTTGT 1745 Query 1559 TGTACCGAGAAGCTACTCTATACCGTCTAGAAATCAGAGAGCCATGGCTCAACAACCGTT 1618 |||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| || Sbjct 1746 TGTACCGAGAAGCTACTCGATACCTTCTAGAAACCAGAGAGCAATGGCCCAACAACCCTT 1805 Query 1619 GCCCGAGAGGAACCAAAACAGAGTCGCCTCTCCACCACCTCTGCCGCTAACTCCAGCGTC 1678 |||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| Sbjct 1806 GCCCGAGAGGAACCAAAACAGAGTAGCCTCTCCACCGCCTCTTCCGCTGACTCCAGCGTC 1865 Query 1679 TCTGATGAATCTCAGATCGCTGTCTCGGTCTCAAGTCGGGGAAGTTGCTCAGAGCGGACT 1738 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1866 TCTGATGAATCTCAGATCGCTGTCTCGGTCTCATGTCGGGGAAGTTGCTCAGAGCGGACT 1925 Query 1739 AATTAGAGGTAACGGAAACAAAACTAACTTACTGTTATT-GTAACTTATCTT-AATCATC 1796 ||||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||||||| Sbjct 1926 AATTAGAGGTAACGGAAACAAAACTAACTTACTGT-ATTTGTAACATATCTTTAATCATC 1984 Query 1797 AATGAT 1802 |||||| Sbjct 1985 AATGAT 1990 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89156167920 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5