BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947621
Length=1802
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41100.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2887 0.0
> AT5G41100.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: hydroxyproline-rich glycoprotein family protein
(TAIR:AT3G26910.2); Has 1503 Blast hits to 1197 proteins in
220 species: Archae - 4; Bacteria - 108; Metazoa - 481; Fungi
- 318; Plants - 186; Viruses - 39; Other Eukaryotes - 367
(source: NCBI BLink). | chr5:16447222-16450881 FORWARD LENGTH=2239
Length=2239
Score = 2887 bits (1563), Expect = 0.0
Identities = 1726/1806 (96%), Gaps = 5/1806 (0%)
Strand=Plus/Plus
Query 1 TTGTTTTGTTCGA-C-GGAAATATGATGAAAGCTTCGTTTGGAAGGTTAAGAAGATTCGC 58
|||||| |||| | | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TTGTTTAGTTCTATCTGGAGATATGATGAAAGCTTCGTTTGGAAGGTTAAGAAGATTCGC 245
Query 59 ATTACCCAAATCCGATGCGATTGATATAGGAGAGCTTTTTCCCACTGCGCAAATTGAAGG 118
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 246 ATTACCCAAAGCCGATGCGATTGATATAGGAGAGCTTTTTCCCACTGCACAAATTGAAGG 305
Query 119 TCTTGCTCGAGCCGCCAAGGATATGCAAGACATGAGAGAGGGTTATGATCGATTACTTGA 178
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 306 TCTTGCTCGAGCCGCCAAGGATATGCAAGATATGAGAGAGGGTTATGATAGATTACTCGA 365
Query 179 AGTAGCTGCTGCGATGGCTAATAGCGCATACGAGTTCTCTGAATCATTGGGGGAAATGGG 238
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 366 AGTAGCTGCTGCTATGGCTAATAGCGCATATGAGTTCTCTGAATCATTGGGGGAAATGGG 425
Query 239 TTCATGCTTGGAGCAAATCGCGCCTCATAATGATCAAGAAAGTGGTGGAATTCTTCTAAT 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 CTCATGCTTGGAGCAAATCGCGCCTCATAATGATCAAGAAAGTGGTGGAATTCTTCTAAT 485
Query 299 GTTAGGTAAAGTTCAGTTTGAGCTTAAGAAACTCGTCGACACTTATCGTTCTCAAATATT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GTTAGGTAAAGTTCAGTTTGAGCTTAAGAAACTCGTCGACACTTATCGTTCTCAAATATT 545
Query 359 CAAGACCATTACACGACCTTCAGAGTCACTTCTCAGTGACCTTAGAACTGTTGAGGATAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CAAGACCATTACACGACCTTCAGAGTCACTTCTCAGTGACCTTAGAACTGTTGAGGATAT 605
Query 419 GAAGCAACAATGTGAAGAAAAGAGAGACGTTGTTAAGCACATGATAATGGAGCATGTGAA 478
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 606 GAAGCAACAATGTGAAGAAAAGAGAGACGTTGTTAAGCACATGCTAATGGAGCATGTGAA 665
Query 479 AGACAAGGTACAAATTAAAGGCAGTAAAGGGGAGAGACTTATTCGCCGTCAGTTAGAGAC 538
||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 666 AGACAAGGTACAAGTTAAAGGCACTAAAGGGGAGAGACTTATTCGCCGTCAGCTAGAGAC 725
Query 539 TGCTCGTGATGAGCTACAAGATGAGGCTACTTTGTGCATTTTCCGATTGAAATCTCTCAA 598
|||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 726 TGCTCGCGATGAGCTACAAGATGAGGCGACTCTGTGCATTTTCCGATTGAAATCTCTCAA 785
Query 599 GGAAGGACAAGCTCGAAGTCTCCTCACACAAGCAGCCCGCCACCACACTGCTCAGATGCA 658
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 GGAAGGGCAAGCTCGAAGTCTCCTCACACAAGCAGCCCGCCACCACACTGCTCAGATGCA 845
Query 659 TATGTTCTTTGCTGGTCTGAAATCGCTTGAGGCAGTAGAGCAACAAGTCAAAATTGCTGC 718
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 846 TATGTTCTTTGCTGGTCTGAAATCGCTTGAGGCAGTAGAGCAACACGTCAGAATTGCTGC 905
Query 719 AGGCAGACAACACATCGACTGTGAGCTCTCTGATCATGGGAACGAAATGGATTGCAGTGA 778
|| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 906 AGATAGACAACACATCGACTGTGTGCTCTCTGATCCCGGGAACGAAATGGATTGTAGTGA 965
Query 779 GGATAATGATGATGATGACCGACTTGTTAACAGAGATGGAGAACTCAGTTTTGACTACAT 838
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 966 GGATAATGATGATGATGACCGACTTGTTAATAGAGATGGAGAACTCAGTTTTGACTACAT 1025
Query 839 AACAAGTGAGCAGAGAGTAGAAGTTATATCTACACCACATGGATCGATGAAGATGGATGA 898
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1026 AACAAGTGAGCAGAGAGTAGAAGTTATATCTACACCTCATGGATCGATGAAGATGGATGA 1085
Query 899 TACAGATCTCTCGTTTCAACGCCCTTCACCTGCAGGATCAGCAACAGTAAATGCAGATCC 958
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1086 CACAGATCTCTCGTTTCAACGCCCTTCACCTGCAGGATCAGCAACAGTAAATGCAGACCC 1145
Query 959 TAGAGAAGAGCACCCAATTTCAAACCGAGATCGCAGAACGAGCAGCCATTCAGCGCCTCT 1018
||||||||||||| || |||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1146 TAGAGAAGAGCACTCAGTTTCAAACCGTGATCGCAGAACGAGCAGCCATTCAGCACCTCT 1205
Query 1019 GTTTCCGGAAAAGAAATCTGATTTAGCAGATAAATTGATGAGGCAAATGACTCCATCTGC 1078
||||||||| |||||| ||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 1206 GTTTCCGGATAAGAAAGCTGATTTAGCAGATAGATCGATGAGGCAGATGACTCCATCTGC 1265
Query 1079 AAATGCTTACATATTACCAACTCCGGTCGATTCAAAGTCCTCACCAATCTTCACAAAACC 1138
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1266 AAATGCTTACATATTACCAACTCCCGTCGACTCAAAGTCCTCACCAATCTTCACAAAACC 1325
Query 1139 TGTCACCCAAACAAACCACAGTGCAAACTTATGGCATTCATCTCCACTAGAACCGATAAA 1198
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1326 TGTCACCCAGACAAACCACAGTGCAAACTTATGGCATTCATCTCCACTAGAACCAATAAA 1385
Query 1199 AACTGCTCGTAAAGATGTGGAAAGTAACCAATATTCCCGTCTTCCCCGTCCTTCAGAACA 1258
||| || | |||||||| |||||| |||| |||||||||||||||||||||||||||||
Sbjct 1386 AACCGCCCATAAAGATGCGGAAAGCAACCTCTATTCCCGTCTTCCCCGTCCTTCAGAACA 1445
Query 1259 TGCATTCTCTGGACCACTCAAGCCATCCTCAACCCGTCTTCCAGTACCGGTTGCAGTTCA 1318
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1446 CGCATTTTCTGGACCACTCAAGCCATCCTCAACCCGTCTTCCAGTACCAGTTGCAGTTCA 1505
Query 1319 GGCTCAGTCATCTTCTCCAAGAATCTCTCCTACCGCTTCACCTCCGCTTGCTTCTTCTCC 1378
|||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||| ||
Sbjct 1506 GGCTCAGTCATCTTCTCCCAGAATATCTCCTACCGCTTCACCGCCTCTTGCTTCTTCCCC 1565
Query 1379 ACGGATCAACGAACTCCATGAGCTTCCAAGACCACCGGGTCAATTTGCACCGCCACGACG 1438
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1566 ACGAATCAACGAACTCCATGAGCTTCCAAGACCACCAGGTCAATTTGCACCGCCACGACG 1625
Query 1439 CTCGAAATCTCCTGGTTTGGTCGGTCATTCGGCTCCATTAACGGCTTGGAATCAAGAAAG 1498
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1626 CTCGAAATCTCCTGGTTTGGTTGGTCATTCGGCTCCATTAACGGCTTGGAATCAAGAAAG 1685
Query 1499 AAGCAATGTAGTTGTGTCAACCAACATTGTAGCATCACCACTTCCGGTTCCACCGCTTGT 1558
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 AAGCAATGTAGTAGTGTCAACCAACATTGTAGCATCACCACTTCCGGTTCCACCGCTTGT 1745
Query 1559 TGTACCGAGAAGCTACTCTATACCGTCTAGAAATCAGAGAGCCATGGCTCAACAACCGTT 1618
|||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| ||
Sbjct 1746 TGTACCGAGAAGCTACTCGATACCTTCTAGAAACCAGAGAGCAATGGCCCAACAACCCTT 1805
Query 1619 GCCCGAGAGGAACCAAAACAGAGTCGCCTCTCCACCACCTCTGCCGCTAACTCCAGCGTC 1678
|||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 1806 GCCCGAGAGGAACCAAAACAGAGTAGCCTCTCCACCGCCTCTTCCGCTGACTCCAGCGTC 1865
Query 1679 TCTGATGAATCTCAGATCGCTGTCTCGGTCTCAAGTCGGGGAAGTTGCTCAGAGCGGACT 1738
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1866 TCTGATGAATCTCAGATCGCTGTCTCGGTCTCATGTCGGGGAAGTTGCTCAGAGCGGACT 1925
Query 1739 AATTAGAGGTAACGGAAACAAAACTAACTTACTGTTATT-GTAACTTATCTT-AATCATC 1796
||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |||||||
Sbjct 1926 AATTAGAGGTAACGGAAACAAAACTAACTTACTGT-ATTTGTAACATATCTTTAATCATC 1984
Query 1797 AATGAT 1802
||||||
Sbjct 1985 AATGAT 1990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89156167920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5