BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947625
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41060.1 | Symbols: | DHHC-type zinc finger family protein ... 2008 0.0
> AT5G41060.1 | Symbols: | DHHC-type zinc finger family protein
| chr5:16435322-16437699 FORWARD LENGTH=1672
Length=1672
Score = 2008 bits (1087), Expect = 0.0
Identities = 1208/1267 (95%), Gaps = 6/1267 (0%)
Strand=Plus/Plus
Query 10 GAGAGAAAGAGATGTATGTAGTGACGCCTCCTCAAAGATCTGGTTTTGGATCCGACTGTG 69
|||||| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 270 GAGAGAGAGAGATGTATGTGGTGACGCCTCCTCAAAGATCCGGTTTTGGATCCGATTGTG 329
Query 70 ATTTACGGGTTTACCAAACATGGAAAGGAAGCAATATATTTTGTCTTCAAGGAAGGTTTA 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 ATTTACGGGTTTACCAAACATGGAAAGGAAGCAATATATTTTGTCTTCAAGGAAGGTTTA 389
Query 130 TTTTCGGGCCAGATGTAAGATCACTTGGTCTGACCATAAGTCTTATCGTGGTTCCTGTTA 189
| |||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 390 TCTTCGGGCCGGATGTAAGATCACTTGGTCTGACCATAAGTCTTATTGTGGCACCTGTTA 449
Query 190 CGATTTTCTGCATCTTCGTTGGTAGCAAACTAATGGAGGACTTCTCTGATAGTTGGGGAG 249
| ||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||
Sbjct 450 CAATTTTCTGCATCTTCGTCGCTAGCAAACTAATGGATGACTTCTCTGATAGTTGGGGAG 509
Query 250 TATCAATAGTCTTTGTTGCTGTTGTCTTCACCATTTATGATTTAATTCTGCTGATGCTTA 309
| |||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 510 TCTCAATAATCCTTGTTGCTGTTGTCTTCACCATTTATGATTTGATTTTGCTGATGCTTA 569
Query 310 CATCCGGAAGAGATCCAGGGATTATCCCAAGAAATTCTCATCCTCCAGAACCTGAAGTTC 369
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 570 CATCCGGAAGAGATCCAGGGATTATCCCAAGAAATTCTCATCCTCCAGAACCAGAAGTTG 629
Query 370 TTGATGGCAACACGGGCTCGGGGACAAGCCAAACTCCAAGATTGCCTCGCGTTAAAGAAG 429
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 630 TTGATGGCAACACGGGCTCGGGAACAAGCCAAACTCCAAGATTGCCTCGTGTTAAAGAAG 689
Query 430 TAGAAGTTAATGGCAAAA-TATTTAAGGTCAAGTACTGTGATACCTGCATGCTCTATAGA 488
| ||||||||||| |||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 690 TGGAAGTTAATGG-AAAAGTATTCAAGGTCAAGTACTGTGATACTTGCATGCTCTATAGA 748
Query 489 CCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCAC 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 CCGCCTCGCTGCTCACATTGTTCGATTTGCAACAACTGTGTAGAAAGGTTTGACCATCAC 808
Query 549 TGTCCTTGGGTTGGTCAATGTATTGCCCAAAGGAACTATCGATTCTTCTTCATGTTTGTC 608
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 809 TGTCCTTGGGTTGGTCAATGTATTGCTCAAAGAAACTATCGATTCTTCTTCATGTTTGTC 868
Query 609 TTCTCCACGACTCTTCTCTGCATATATGTGTTCGCCTTTTGTTGTGTCTATATAAGGAAG 668
|||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||
Sbjct 869 TTCTCCACGACTCTTCTCTGTGTATATGTGTTCGCCTTTTGTTGTGTCTACATAAAGAAG 928
Query 669 ATCAAAGAATCTGAAGATATAACCATCTTGAAAGCAATGCTCAAAACTCCAGCTTCCATT 728
|||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 929 ATCAAAGAGTCCGAAGATATAAGTATCTTGAAAGCAATGCTCAAAACTCCAGCTTCCATT 988
Query 729 GCTCTGATACTCTACACATTCATATCGACGTTTTTCGTTGGGGGCTTAACATGTTTTCAT 788
|||||||||||||||||||||||||| || || |||||||| |||||||||||||| |||
Sbjct 989 GCTCTGATACTCTACACATTCATATCTACATTCTTCGTTGGAGGCTTAACATGTTTCCAT 1048
Query 789 CTCTATCTCATCAGCACAAATCAGACTACATATGAGAATTTCAGATACAGTTATGA-CAG 847
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1049 CTCTATCTCATCAGCACAAATCAGACTACATATGAGAATTTCAGATACAGTTATGATC-G 1107
Query 848 GCTTAGCAACCCACATAACAAAGGAGTGGTTGATAACTTTAAAGAAATCtttttttCTCC 907
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1108 GCATAGCAACCCACATAACAAAGGAGTGGTTGATAACTTCAAAGAAATCTTTTTTTCTCC 1167
Query 908 AATACCTCCTTCAAAGAACAACTTCAGGGCTATGGTACCAAGGGAAAATCCAATGCCGCC 967
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1168 AATACCTCCTTCAAAGAACAACTTCAGGGCTATGGTACCAAGGGAAAATCCAATGCCGTC 1227
Query 968 GAGATCAGTTGTTGGCGGTTTTATGAGTCCAAACATGGGAAAAGCCAATGATGATATTGA 1027
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1228 GAGATCAGTTGTTGGCGGTTTTATGAGTCCAAACATGGGAAAGGCCAATGATGATATTGA 1287
Query 1028 AATGGGGAGGAAAGGCGTTTGGGCAATGGCTGAACATGGTGATGGCAAAAATGGCAATAA 1087
|||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1288 AATGGGGAGGAAGGGTGTTTGGGCAATGGCTGAACATGGTGATGGCAAAGATGGCAATAA 1347
Query 1088 CAATGAACGGTTTCATGTTAACGACAATGAGTTAAACGAGTTATCACCAGACATGAGGAC 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1348 CAATGAACGGTTTCATGTTAACGACAATGAGTTAAACGAGTTATCACCAGACATGGGGAA 1407
Query 1148 CATAGTTGA-TGGTGATGAACAAATCGATAGGCCAAGCAATCACCCGAGGAACGCAAACT 1206
|||||| || ||||||||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1408 CATAGT-GAATGGTGATGAGCAAATCAATAGGCCAAACAATCACCCGAGGAACGCAAACT 1466
Query 1207 GGGAAATGTCACCAGAAGTTATGGCCTTATCAGCAAGAAGAGCTTAGAAACAGGTTAAGA 1266
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1467 GGGAAATGTCACCAGAAGTTATGGCCTTATCAGCAAGAAGAGCTTAGAAGCAGGTTAAGA 1526
Query 1267 GAAAATT 1273
|||||||
Sbjct 1527 GAAAATT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5