BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947629
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT5G41020.1 | Symbols: | myb family transcription factor | chr... 1472 0.0
> AT5G41020.1 | Symbols: | myb family transcription factor | chr5:16425883-16427797
REVERSE LENGTH=1915
Length=1915
Score = 1472 bits (797), Expect = 0.0
Identities = 946/1015 (93%), Gaps = 22/1015 (2%)
Strand=Plus/Plus
Query 730 GAAGCAAGAGTCTGTTCAGAGTGATAAAGA-TGTGACCACCCCATCAAGTAAAAGC-ACA 787
|||| || |||||| | | |||||| |||| | ||||||||||||| | | | | |
Sbjct 911 GAAG-AAAAGTCTGATAAAAGTGATGAAGACT-TGACCACCCCATC---T-ACATCAAGT 964
Query 788 AAAAGGGTGAAATTTTCTG-CCGAAGTGGAATTTTTTCCTA--G-TGACGATGAAGAAAC 843
||||||||||| ||||||| || ||||||| |||||||||| | ||| ||||||| |||
Sbjct 965 AAAAGGGTGAAGTTTTCTGACC-AAGTGGAGTTTTTTCCTAGTGATGATGATGAAGGAAC 1023
Query 844 ---AGAAGATGATGAAGAAGAAGTTAAGGTGGTTAGGGGTAAGCGGTATACAAAAGAAGA 900
||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1024 GGAAGATGATGATGAAGAAGAAGTTAAGGTGGTGAGGGGTAAGCGGTTTACAAAAGAAGA 1083
Query 901 AGATGAGTTGGTAAAGAATGCTGTATTAGAATACATTGATAACCATGCTTTAGGAGAGGA 960
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1084 AGATGAGATGGTAAAGAATGCTGTATTAGAATACATTGATAACCATGCTTTAGGAGATGA 1143
Query 961 GGGGATAAAGATGGTTATGGATTGCAAGTCACACCCACAACTTAAAGGCTGTTGGAAAGA 1020
||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||
Sbjct 1144 GGGGATAAAGATGGTTATGGAATGCAAGGCATACCCACAACTTAAAGGCTGTTGGAAAGA 1203
Query 1021 AATTGCATCTGCTTTACCTTGGAGGGCAAATAATAGTGTGTATAATCGTGCACATACTAT 1080
|||| |||||||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 1204 AATTACATCTGCTTTACCTTGGAGGACTTATAATAGTGTGTATCATCGTGCACATACTAT 1263
Query 1081 ATTTGAAGCAGGATC-CAAGGGGATGTGGGCGAAAGAGGATATTGAACTCGTTATGGAGT 1139
||||||||||||||| | ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1264 ATTTGAAGCAGGATCTC-AGGGGATATGGACGAAAGAGGATATTGAACTCGTTATGGAGT 1322
Query 1140 TTCAAAAGAAACACGGGAATGATTGGAGAACACTTGCAGATGCAATGGGTAAACATAGGA 1199
||||||||| ||||||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 1323 TTCAAAAGACACACGGGAATGATTGGAAAACACTTGCAGATGCAATGGGTAAGCACAGGA 1382
Query 1200 AGCATGTGAAAGACGCTTGGAGGAGAGGAAGATTGGCAGAG-AAGAAGAAAGGACATTGG 1258
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1383 AGCATGTGAAAGACGCTTGGAGGAGAGGAAGATTGGCAG-GTAAGAAGAAAGGACATTGG 1441
Query 1259 ATGAGGGAGGAGTATCAAAAACTCTTTGACCTTGTGAACAAAGACCTTAGAATGAAAGCA 1318
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1442 ATGAGGGAGGAGTATCAAAACCTCTTTGACCTTGTCAACAAAGACCTTAGAATGAAAGCA 1501
Query 1319 TTCCAAGAGAAGCACTCTAAACATGGTATGCTCAAAGATAACATCCCTTGGATGGCGATA 1378
||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1502 TTCAAAGAGAAACACTCAAAACATGGTATGCTCAAAGATAACATCCCTTGGATGGCTATA 1561
Query 1379 AGCGACGTACTTGGAACACGGGACCACGTCACTTGCTG-CAGTAAATGGTATGAGCAGTT 1437
||||||||||||| ||||||||||||||| |||||||| ||| |||||||||||||||||
Sbjct 1562 AGCGACGTACTTGAAACACGGGACCACGTGACTTGCTGCCAG-AAATGGTATGAGCAGTT 1620
Query 1438 GATGTCACCAATGGTAGCAAAGGGAATGTGGGCTAACGTAGATGACTATAGACTCTTGGA 1497
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1621 GATATCACCAATGGTAGCAAAGGGAATGTGGGCTAACGTTGATGACTATAGGCTCTTGGA 1680
Query 1498 AGAGCTTTTGAAACTGGATGCTGCTTGTATCGACGATGTGGATTGGGATAATCTTTTGGA 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 AGAGCTTTTGAAACTGGATGCTGCTTGTATCGACGATGTGGATTGGGATAATCTTTTGGA 1740
Query 1558 AAATCGAGATGGAGAAGCTTGTAGAAAACGGTGGAACCAGATGATCATTCATATCGGTGT 1617
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1741 GAATCGAGATGGAGAAGCTTGTAGAAAACGGTGGAACCAGATGATCATTCATATCGGCGT 1800
Query 1618 ACCGAAATCCAAAACATTTGCAGAACAAGTTGAGATTTTGTCTGAAAGGTATTGCCCTGA 1677
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1801 ACCGAAATCGAAAACATTTGCAGAACAAGTTGAGATTTTGTCTGACAGGTATTGCCCTGA 1860
Query 1678 CATAGCTGAGGACAGAGAGGATTTTGACAACAGACCCTATGATCCTGAAGATTAA 1732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 CATAGCTGAGGACAGAGAGGATTTTGACAACAGACCCTATGATCCTGAAGATTAA 1915
Score = 196 bits (106), Expect = 5e-49
Identities = 247/307 (80%), Gaps = 41/307 (13%)
Strand=Plus/Plus
Query 278 AAGAAGAAAATTAAGGAGACAAAGGTTGATTCTGAAGCTGAGGATGGTGTgaaaaagaag 337
||| |||||| |||||||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct 503 AAGGAGAAAAGTAAGGAGACAAAGGTTGATTCTGAAGCTCATGATGGTGTG---AAG-AG 558
Query 338 aagaagaagaagaagagcaagaaagaaTCTGG-GAGTGATGTGATAGGGAATAGTGAAAG 396
|||||||||||||||||||||||||||||| | |||||||||||| |||| ||||||
Sbjct 559 --GAAGAAGAAGAAGAGCAAGAAAGAATCTGGTG-GTGATGTGATAGAAAATACTGAAAG 615
Query 397 CTCCGAAGTTTGTGAGAAACCACTCGTGCATATTGATGATGCTGATAAGAGAAAGGGAAA 456
|||| |||| | || || ||| || | | ||| |||| ||
Sbjct 616 CTCCAAAGT-----A--------TC-TG-ATAA-GA--A-----A-AAGGGAAA---AA- 647
Query 457 GAGAAAGCGGGATGATACTGATTTGGTAGCTgaagaaaacacagacaaggaggttaagag 516
|| || |||||||||||||||||||| |||||||||||||| |||||||||||| |||||
Sbjct 648 GA-AA-GCGGGATGATACTGATTTGGGAGCTGAAGAAAACATAGACAAGGAGGTGAAGAG 705
Query 517 gaagaagagcaagaagaagaaacaaagTGTGGATTCAGAGGTTGAAGATAACAACTTGAA 576
|||||| ||| |||||||||| ||||||||||||||| |||||||||| ||| ||| |
Sbjct 706 GAAGAA---CAACAAGAAGAAACCAAGTGTGGATTCAGATGTTGAAGATATCAATTTGGA 762
Query 577 CTCTACA 583
|||||||
Sbjct 763 CTCTACA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5