BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947634

Length=250
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40980.1 | Symbols:  | Protein of unknown function (DUF 3339...   425    7e-119


> AT5G40980.1 | Symbols:  | Protein of unknown function (DUF 3339) 
| chr5:16414848-16415220 REVERSE LENGTH=373
Length=373

 Score =  425 bits (230),  Expect = 7e-119
 Identities = 240/245 (98%), Gaps = 0/245 (0%)
 Strand=Plus/Plus

Query  4    ACAGATTTTGTTGAGATATGAGTGCAGATTGGGGACCTGTGATTGTAGCAGTAGCTCTGT  63
            |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  118  ACAGATTTTGTTGAGATATGAGTGCAGACTGGGGACCTGTGATTGTAGCAGTGGCTCTGT  177

Query  64   TCATCCTACTCTCACCAGGATTGCTATTTCAGCTACCGGCAAGGACAAGAGTGATGGAGT  123
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  178  TCATCCTACTCTCACCAGGATTGCTATTTCAGCTACCGGCAAGGACAAGAGTGATGGAAT  237

Query  124  TTGGGAACATGAGCACAAGCGGGATTTCGATTTTGGTCCACGCCATTATTTACTTCTGTA  183
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  TCGGGAACATGAGCACAAGCGGGATTTCGATTTTGGTCCACGCCATTATTTACTTCTGTA  297

Query  184  TACTCACTATCTTGATCATTGCCATACAAATTCACATCCATTTCTGATCTTGTAGTGTAA  243
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  298  TACTCACTATCTTGATCATTGCCATACAAATTCACATCCATTTCTGATCATGTAGTGTAA  357

Query  244  CAAAG  248
            |||||
Sbjct  358  CAAAG  362



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11360511274


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5