BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947636

Length=249
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40960.1 | Symbols:  | Protein of unknown function (DUF 3339...   411    2e-114


> AT5G40960.1 | Symbols:  | Protein of unknown function (DUF 3339) 
| chr5:16412591-16413202 REVERSE LENGTH=612
Length=612

 Score =  411 bits (222),  Expect = 2e-114
 Identities = 240/249 (96%), Gaps = 0/249 (0%)
 Strand=Plus/Plus

Query  1    TCTTGTTCTTGTAAGAAGATATGCATGATTGGGCTGCACCGTTGATAGCTTCGGCTTTGT  60
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  232  TCTTGTTCTTGTAAGAAGAGATGCATGATTGGGCTGCACCGTTGATAGCTTCGGCTTTGT  291

Query  61   TTGCGTTTCTGTCGCCAGGATTGATACTGCAGTTTCCGGGGAAAGAATCACCGGTGGGTT  120
            | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct  292  TCGCGTTTCTGTCGCCAGGGTTGATACTGCAGTTTCCGGGGAAAGAATCTCCGGTGGGTT  351

Query  121  TCATGAACATGAAGACGACGGTAGCTTCTATTTTCGTTCACACTGTTCTCTATGGTCTCT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  352  TCATGAACATGAAGACGACGGTAGCTTCTATTTTCGTTCACACTGTTCTCTATGGTCTCT  411

Query  181  TTCTTATCCTCTTCCTCGTCGTTCTCAACATCCATGTCTATGTATAGCTCATTTATTACA  240
            ||||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct  412  TTCTTATCCTCTTTCTCGTTGTTCTCAACGTCCATGTCTATGCATAGCTCATTTATTACA  471

Query  241  CTCGTGTAT  249
            ||| |||||
Sbjct  472  CTCATGTAT  480



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11310243525


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5