BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947638
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40942.1 | Symbols: RNR2B | pseudogene of ribonucleoside-dip... 1616 0.0
AT3G27060.1 | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide r... 933 0.0
> AT5G40942.1 | Symbols: RNR2B | pseudogene of ribonucleoside-diphosphate
reductase small chain/ ribonucleotide reductase |
chr5:16408166-16409165 FORWARD LENGTH=1000
Length=1000
Score = 1616 bits (875), Expect = 0.0
Identities = 960/1002 (96%), Gaps = 2/1002 (0%)
Strand=Plus/Plus
Query 21 ATGCCTTCGATGCCAGAGGAACCAATCCTAACACCAACACCAGATCGATTCTGTATGTTC 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCTTCGATGCCAGAGGAACCAATCCTAACACCAACACCAGATCGATTCTGTATGTTC 60
Query 81 CCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACC 140
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAATCCAATACCCACAGATTTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCTGGACA 120
Query 141 GCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTATCCAACGAC 200
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 GCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTAACCAACGAC 180
Query 201 GAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCAGACGGAATCGTTCTG 260
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GAACGTCACTTCATTAAACACGTCCTCGCCTTCTTCGCCGCATCAGACGGAATCGTTCTC 240
Query 261 GAGAATCTCTCAACCCGATTCATGTCCGATGTTCAGGTCTCAGAAGCTCGTGCCTTCTAC 320
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GAGAATCTCTCAACTAGATTCATGTCCGATGTTCAGATCTCAGAAGCTCGTGCCTTCTAC 300
Query 321 GGTTTCCAAATCGCAATCGAGAATATTCATTCTGAGATGTATAGTCTCCTTCTCGACACT 380
|| ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 301 GGATTCCAAATCGCGATTGAGAATATTCACTCCGAGATGTATAGTCTCCTTCTCGACACG 360
Query 381 TACATCAAAGACAACAAAGAGAGAGATCATCTCTTTCGCGCAATCGAAACAATTCCTTGT 440
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| | |
Sbjct 361 TATATCAAAGACAACAAAGAGAGAGATCATCTTTTTCGTGCAATCGAAACCATTCC-T-T 418
Query 441 GTGACGAAAAAAGCAGAATGGGCTATGAAATGGATCAACGGATCTCAAAGCTTCGCTGAG 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTGACGAAAAAAGCAGAATGGGCTATGAAATGGATCAACGGATCTCAAAGCTTCGCTGAG 478
Query 501 AGAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCTTTTGTTCGATA 560
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 AGAATCGTAGCGTTTGCTTGCGTTGAAGGTATATTCTTCTCCGGTAGCTTTTGTTCGATA 538
Query 561 TTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACGAATTGATTTCG 620
|||||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 539 TTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACTTTTTCAAACGAATTGATTTCG 598
Query 621 AGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATCTATAGTCTTCTTAGAACTAAG 680
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 599 AGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGATATATAGTCTTCTTAGAACTAAG 658
Query 681 CTTGATGAAGAACGTTTGAAATCGATTGTTTGTGATGCGGTTGAGATCGAGAGAGAGTTT 740
|||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 659 TTTGATGAAGATCGTTTGAAAGCGATTGTTTGTGATGCTGTTGAGATTGAGAGAGAGTTT 718
Query 741 GTTTGCGACGCGCTTCCTTGTGCCTTGGTTGGTATGAATCGTGATTTGATGAGTCAGTAC 800
||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 719 GTTTGTGACGCGCTTTCTTGTGCCTTGGTTGGGATGAATCGTGAGTTGATGAGTCAGTAC 778
Query 801 ATTGAGTTTGTTGCTGATAGGTTATTGACTGCGCTTGGGTGTGGTAAGGTGTATGGTGTG 860
|||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 779 ATTGAGTTCGTTGCTGATAGGTTGTTGGCTGCGCTTGGGTGTGGTAAGGTGTATGGTGTG 838
Query 861 AGTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAAGGTAAAACTAACTTTTTTGAG 920
| |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 839 ACTAATCCTTTTGATTGGATGGAATTGATTTCGCTTCAGGGTAAGACCAACTTTTTTGAG 898
Query 921 AAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTTATGTCTAGTGTTCATGGAAACGCTGCG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGAGAGTTGGTGAGTATCAGAAAGCTTCTGTTATGTCTAGTGTTCATGGAAACGCTGCG 958
Query 981 TTTAATGATGATCATGTCTTCAAGCTTGACGAGGATTTTTAG 1022
||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTTAATGATGATCATGTCTTCAAGCTTGACGAGGATTTTTAG 1000
> AT3G27060.1 | Symbols: TSO2, ATTSO2 | Ferritin/ribonucleotide
reductase-like family protein | chr3:9979866-9981295 REVERSE
LENGTH=1342
Length=1342
Score = 933 bits (505), Expect = 0.0
Identities = 857/1023 (84%), Gaps = 39/1023 (4%)
Strand=Plus/Plus
Query 17 aaaaaTGCCTTCGATGCCAGAGGAACCAATCCTAACACCAACACCAGATC-GATTCTGTA 75
||| |||||||| |||||||| || || ||||||||||||| ||||| | |||||||||
Sbjct 235 AAAGATGCCTTCAATGCCAGAAGAGCCGCTCCTAACACCAACCCCAGA-CAGATTCTGTA 293
Query 76 TGTTCCCAATCCAATACCCACAGATCTGGGAGATGTACAAGAAAGCCGAAGCATCCTTCT 135
|||||||||| || ||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 294 TGTTCCCAATTCACTACCCACAGATCTGGGAAATGTACAAAAAAGCCGAAGCATCATTCT 353
Query 136 GGACCGCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAAACTCACTATCCA 195
|||||||||||||||| ||||| || |||||||| |||||||||||||| || | | ||
Sbjct 354 GGACCGCCGAAGAAGTAGATCTATCACAAGACAACCGCGACTGGGAAAA--CAGTCT-CA 410
Query 196 ACGAC---GAACGTCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCATCAGACGGAA 252
||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 411 ACGACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCTGCATCTGACGGAA 470
Query 253 TCGTTCTGGAGAATCTCTCAACCCGATTCATGTCCGATGTTCAGGTCTCAGAAGCTCGTG 312
|||| || ||||||||| | | || ||||||||||||||||| ||||| || || ||||
Sbjct 471 TCGTACTAGAGAATCTCGCTTCTCGCTTCATGTCCGATGTTCAAGTCTCTGAGGCGCGTG 530
Query 313 CCTTCTACGGTTTCCAAATCGCAATCGAGAATATTCATTCTGAGATGTATAGTCTCCTTC 372
| |||||||||||||| ||||| || || || || || || |||||||||||||||||||
Sbjct 531 CTTTCTACGGTTTCCAGATCGCGATTGAAAACATCCACTCGGAGATGTATAGTCTCCTTC 590
Query 373 TCGACACTTACATCAAAGACAACAAAGAGAGAGATCATCTCTTTCGCGCAATCGAAACAA 432
|||| ||||| |||||||| |||||||||||||||||||||||||| || || |||||||
Sbjct 591 TCGATACTTATATCAAAGATAACAAAGAGAGAGATCATCTCTTTCGTGCCATTGAAACAA 650
Query 433 TTCCTTGTGT-GACGAAAAAAGCAGAATGGGCTATGAAATGGATCAACGGATCTCAAAGC 491
| ||||| || | | || ||||| |||||||||||||||||||| |||| ||||| | |
Sbjct 651 TCCCTTGCGTCGCC-AAGAAAGCTCAATGGGCTATGAAATGGATCGACGGTTCTCAGA-C 708
Query 492 TT-CGCTGAGA-GAATCGTAGCTTTTGCTTGCGTTGAAGGTATATTCTTCTCTGGTAGCT 549
|| ||| || | ||||| | ||||| |||||||| |||||||| |||||||| || ||||
Sbjct 709 TTTCGCCGA-ACGAATCATCGCTTTCGCTTGCGTCGAAGGTATCTTCTTCTCCGGAAGCT 767
Query 550 TTTGTTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCACATTCTCTAACG 609
||||||| || |||||| ||||||||||||| | ||||||||| | |||||||| ||||
Sbjct 768 TTTGTTCAATCTTCTGGCTGAAGAAACGAGGACTCATGCCTGGATTAACATTCTCAAACG 827
Query 610 AATTGATTTCGA-GAGACGAAGGTCTT-CACTGTGATTTCGCTTGTTTGA-TCTATA-GT 665
||||||| || | | ||||||||| || |||||||||||||||||| | | |||| | |
Sbjct 828 AATTGATCTC-ACGTGACGAAGGT-TTACACTGTGATTTCGCTTGTCT-ACTCTACACG- 883
Query 666 CTTCTTAGAACTAAGCTT-GATGAAGAACGTTTGAAATCGATTGTTTGTGATGCGGTTGA 724
|| || | ||| |||||| | |||||||| ||||||| || || || || ||||| ||
Sbjct 884 CTACTCAAAACAAAGCTTAGC-GAAGAACGCGTGAAATCAATCGTCTGCGACGCGGTCGA 942
Query 725 GATCGAGAGAGAGTTTGTTTGCGACGCGCTTCCTTGTGCCTTGGTTGGTATGAATCGTGA 784
||||||||||||||||| |||||||||||||| || || |||||||| ||||| |||||
Sbjct 943 AATCGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTGCGCGTTGGTTGGGATGAACCGTGA 1002
Query 785 TTTGATGAGTCAGTACATTGAGTTTGTTGCTGATAGG-TTATTGACTGCGCTTGGGTGTG 843
||||||||||||||| |||||||||||||| |||||| || ||| ||||||||||| |
Sbjct 1003 TTTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTT-TTGGGTGCGCTTGGGTACG 1061
Query 844 GTAAGGTGTATGGTGTGAGTAATCCTTTTGATTGGATGGAA-TTGATTTCGCTTCAAGGT 902
| |||||||| ||||| | |||||| || |||||||||||| || ||||| ||||||||
Sbjct 1062 GGAAGGTGTACGGTGTTACTAATCCGTTCGATTGGATGGAACTT-ATTTCACTTCAAGGG 1120
Query 903 AAAACTAACTTTTTT-GAGAAGA-GAGTTGGTGAGTATCAGAAAG-CTTCTGTTATGTCT 959
||||| || ||| || ||||| | | |||||||| || || |||| |||| |||||||||
Sbjct 1121 AAAACGAA-TTTCTTCGAGAA-ACGTGTTGGTGATTACCA-AAAGGCTTCCGTTATGTCT 1177
Query 960 AGTGTTCATGGAAACG-CTGCGTTTAATGATGATCATGTCTTCAAGCTTGACGAGGATTT 1018
|| ||| |||| |||| | |||||| || | | ||||||||| || ||||| |||||
Sbjct 1178 AGCGTTAATGGTAACGGC-GCGTTTGAT-A--ACCATGTCTTCTCTCTCGACGAAGATTT 1233
Query 1019 TTA 1021
|||
Sbjct 1234 TTA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5