BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947657
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40830.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1954 0.0
AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectas... 959 0.0
> AT5G40830.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:16354380-16356273
REVERSE LENGTH=1620
Length=1620
Score = 1954 bits (1058), Expect = 0.0
Identities = 1201/1271 (94%), Gaps = 6/1271 (0%)
Strand=Plus/Plus
Query 3 TATAAGCTACATTGAAGTATGGGATCCGTATCGCTAAAGATTGGCGATGGAAGCGCAAGA 62
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct 127 TATAAGCTACATTGAAGTATGGGATCTGTATCGCTGAAGATTGGCGATGGAACCGCAAGA 186
Query 63 TTCAAGCGATCAACGCTTTTTTCTTCCGCCATCAACCTCCTTATGCTTTTCTCTATAGTC 122
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 187 TTCAAGCGATCAACGCTTTTTTCTTCAGCTATCAACCTCCTTATGCTTTTCTCTATAGTC 246
Query 123 ACTACAAATCTCTTTGCATTATACGCCTTCTCGTCTCGGTCCCAATCCCACACGCCACAT 182
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 247 ACTACAAATCTCTTTGCACTATACGCCTTCTCGTCTCGGTCTCAATCCCACACGCCACAC 306
Query 183 CCTCTTCATTCCAACAATGTCTCTTTGGTTTCTCAACATCTATCACTCATCCTCAGAGAA 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 307 CCTCTTCATTCCAACAATGTCTCTTTGGTTTCTCAACATCTCTCACTCATCCTCAGAGAA 366
Query 243 ATCGATTCGTCCCACCGTACACTCTCTCTA-ATGGAGAAACAAATGATTGGTTTTGAATC 301
|||||||| ||||||| |||||| ||| | ||||||||||| || ||||||| ||||||
Sbjct 367 ATCGATTCCTCCCACCACACACTCACTC-AGATGGAGAAACAGATTATTGGTTATGAATC 425
Query 302 TCTCGATCTTTCACATCAAGAAGTTCCACAAGAGCTTAAACTTTTCCTCCAACAACATCA 361
||||||||| || || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 426 TCTCGATCTCTCGCAACAAGAAGTTCCACAAGAGCTTAAACTTTTCCTTCAACAACATCA 485
Query 362 GCTTCCTCTTGGTAAAGATTCTCGTACTGGTATCACACATATGGTTGCATCTGTTGGACA 421
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 486 GCTTCCTCTTGGTAAAGATTCTCGTACTGGTATCACACAAATGGTTGCATCTGTTGGACA 545
Query 422 TTCCTGTGAAATGTCTCTAGATTTGTTATCTCAGTATATGTCGTACAATGTGTTTGAAAA 481
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 546 TTCCTGTGAAATGTCTCTAGATTTGTTATCTCAGTATATGTCGTATAATGTCTTTGAAAA 605
Query 482 GTGTCCGGATGATTGGAGCCTAGCACAGAAGTTGATTCTCCGTGCTTGTGAACCGTTGCC 541
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 606 ATGTCCTGATGATTGGAGCCTAGCTCAGAAGTTGATTCTCCGTGCTTGTGAACCGTTGCC 665
Query 542 ACGCCGTCGTTGTTTGGCTAAAACAGTACAGAAGA-CGGGTCTCGCTTGGTTTCCTGATT 600
||||||||| |||||||||||||| || || || | | |||||||||| |||||||||||
Sbjct 666 ACGCCGTCGATGTTTGGCTAAAACGGTGCATAA-ACCAGGTCTCGCTTTGTTTCCTGATT 724
Query 601 CTTTGTGGAGACCAGTTAGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTT 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CTTTGTGGAGACCAGTTGGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTT 784
Query 661 TCGAATGCTTGAAAGCTAAGAAACTGAGCCGGAATTGTGTTGGTTGCTTTGATCTAGCTA 720
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 785 TCGAATGCTTGAAAGGTAAGAAACTGAGCCGGGATTGTGTTGGTTGCTTTGATCTAGCTA 844
Query 721 CTAGTCATGAGAAAGACAGGTTTGTTAAGGTTAAAGGGAAGACTGATTTCTTGATAGATG 780
|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 845 CTAGTCATGAGAAAGATAGGTTTGTTAAGGTTAATGGGAAGACTGATTTCCTGATAGATG 904
Query 781 ATGTTTTGGGTTTAAGCGATGGGAAAATCCGAATCGGGTTTGATATTAGCAGTGGATCAG 840
||||||||| |||| ||||||||||||||||||| || || |||||||||||||||||||
Sbjct 905 ATGTTTTGGATTTAGGCGATGGGAAAATCCGAATAGGATTCGATATTAGCAGTGGATCAG 964
Query 841 GTACATTTGCTGCTAGAATGGCTGAAAAGAATGTGAATATAATCAGTAACACATTGAATA 900
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 965 GTACGTTTGCTGCTAGAATGGCTGAAAAGAATGTGAATATAATCAGTAATACATTGAATA 1024
Query 901 TAGATGCTCCTTTCAGTGAATTCATAGCTGCGCGAGGGGTTTTTCCGTTGTTCATTAGTT 960
|||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 1025 TAGATGCTCCTTTCAGCGAATTCATAGCTGCGAGAGGAATTTTTCCGTTGTTCATGAGTT 1084
Query 961 TGGATCAGAGATTACCGTTCTACGACAATGTTTTCGATCTCATTCACGGTTCCAACGGAT 1020
||||||||||||||||||||||||||||||||||||||||||| || | || |||||||
Sbjct 1085 TGGATCAGAGATTACCGTTCTACGACAATGTTTTCGATCTCATACATGCATCTAACGGAT 1144
Query 1021 TGGATTTAGCGGCTAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATC 1080
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1145 TGGATTTAGCGGTTAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATC 1204
Query 1081 GGATCTTGAAACCCGGTGGATTGTTCTGGTTAGACAATTTCCATTGCGGTAATGATGAGA 1140
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1205 GGATCTTGAAACCCGGTGGATTGTTCTGGTTAGACAATTTCTATTGCGGTAACGATGAGA 1264
Query 1141 AGAAGAGAGTTCTTACACGTTTGATAGAGCGGTTTGGGTATAAGAAGTTAAAATGGGTTG 1200
|||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1265 AGAAGAGAGTTCTTACGCGTTTGATAGAGAGGTTTGGGTATAAGAAGTTGAAATGGGTTG 1324
Query 1201 TTGGAGAGAAAACTGATG-TAGAGGTTTATCTCTCGGCTGTTCTGCAGAAGCCTGCCAGG 1259
|||||||||||||||||| | ||||||| |||||||||||||||||| ||||||||| ||
Sbjct 1325 TTGGAGAGAAAACTGATGCT-GAGGTTTTTCTCTCGGCTGTTCTGCAAAAGCCTGCCCGG 1383
Query 1260 ATTTGATTGAT 1270
|||||||||||
Sbjct 1384 ATTTGATTGAT 1394
> AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated
and RAD3-related | chr5:16342745-16353898 REVERSE
LENGTH=9189
Length=9189
Score = 959 bits (519), Expect = 0.0
Identities = 663/732 (91%), Gaps = 11/732 (2%)
Strand=Plus/Plus
Query 558 GCTAAAACAGTACAGAAGACGGGTCTCGC-TTGGTTTCCTGATTCTTTGTGGAGACCAGT 616
|||||||||||||| ||| | |||||||| | ||||| |||||||||||||||| | ||
Sbjct 8269 GCTAAAACAGTACATAAGCCAGGTCTCGCACT-GTTTCATGATTCTTTGTGGAGAACGGT 8327
Query 617 TAGTAACAGTAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTTTCGAATGCTTGAAAGC 676
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 8328 CAGTAACAATAGTGTTAACTGGAGCGGTCTTGGCTGCAAAAGTTTTGAATGCTTGAAAGG 8387
Query 677 TAAGAAACTGAGCCGGAATTGTGTTGGTTGCTTTGATCTAGCTACTAGTCATGAGAAAGA 736
| ||||||||||| ||| |||||||||||||||||||||| || |||||||||||||
Sbjct 8388 T-CTTAACTGAGCCGGGATTTTGTTGGTTGCTTTGATCTAGCT-CTGGTCATGAGAAAGA 8445
Query 737 CAGGTTTGTTAAGGTTAAAGGGAAGACTGATTTCTTGATAGATGATGTTTTGGGTTTAAG 796
||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||| |
Sbjct 8446 TAGGTTTGTTAAGGTTAAAGTGAAGACTGATTTCCTGATAGATGATG-TTTGGGTTTAGG 8504
Query 797 CGATGGGAAAATCCGAATCGGGTTTGATATTAGCAGTGGATCAGGTACATTTGCTGCTAG 856
||||||||||||||||||||| || ||||||||||| |||||||| || |||||||||||
Sbjct 8505 CGATGGGAAAATCCGAATCGGATTCGATATTAGCAGCGGATCAGGCACGTTTGCTGCTAG 8564
Query 857 AATGGCTGAAAAGAATGTGAATATAATCAGTAACACATTGAATATAGATGCTCCTTTCAG 916
|||||||||||||||| ||||||| ||| ||| ||||| ||||||||||||||||||||
Sbjct 8565 AATGGCTGAAAAGAATCTGAATATTATCGGTATTACATTAAATATAGATGCTCCTTTCAG 8624
Query 917 TGAATTCATAGCTGCGCGAGGGGTTTTTCCGTTGTTC--A-TTAGTTTGGATCAGAGATT 973
|||||||||||| | ||||| |||||||||||||| | ||||||||| |||||||
Sbjct 8625 CGAATTCATAGCTACAAGAGGGATTTTTCCGTTGTTCAGAGGGAGTTTGGATTAGAGATT 8684
Query 974 ACCGTTCTACGACAATGTTTTCGATCTCATTCACGGTTCCAACGGATTGGATTTAGCGGC 1033
|||||||| ||||||||||| ||||||||||| | ||| |||||||||||||||||||
Sbjct 8685 CCCGTTCTATGACAATGTTTTTGATCTCATTCATGCTTCTAACGGATTGGATTTAGCGGT 8744
Query 1034 TAGTAATAAACCCGAGAAGCTGGAGTTCTTGATGTTTGATCTTGATCGGATCTTGAAACC 1093
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 8745 TAGTAGTAAACCCGAGAAGCTAGAGTTCTTGATGTTTGATCTTGATCGGATCTTGAAACC 8804
Query 1094 CGGTGGATTGTTCTGGTTAGACAATTTCCATTGCGGTAATGATGAGAAGAAGAGAGTTCT 1153
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 8805 CGGTGGATTGTTCTAGTTAGACAATTTCTATTGCGGTAATGATGAGAAGAAGAGAGTTCT 8864
Query 1154 TACACGTTTGATAGAGCGGTTTGGGTATAAGAAGTTAAAATGGGTTGTTGGAGAGAAAAC 1213
||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 8865 TACGCGTTTGATAGAGAGGTTTGGGTATAAGAAGTTGAAATGGGTTGTTGGAGAGAAAAC 8924
Query 1214 TGATG-TAGAGGTTTATCTCTCGGCTGTTCTGCAGAAGCCTGCCAGGATTTGATTGATTT 1272
||||| | ||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 8925 TGATGCT-GAGGTTTTTCTCTCGGCTGTTCTGCAGAAGCCTGCCAGGATTTGATTGGTTT 8983
Query 1273 TTGT-TGCTTTT 1283
|| | | |||||
Sbjct 8984 TTTTCTTCTTTT 8995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63202486155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5