BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947659
Length=371
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40830.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 420 5e-117
AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectas... 348 2e-95
> AT5G40830.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:16354380-16356273
REVERSE LENGTH=1620
Length=1620
Score = 420 bits (227), Expect = 5e-117
Identities = 341/391 (87%), Gaps = 28/391 (7%)
Strand=Plus/Plus
Query 1 TTGCTTTGATCTAGCTGCTACTCATGAGAAAGATAGGTTTGTTAAGGTTAAAGGTGAAGA 60
|||||||||||||||| ||| |||||||||||||||||||||||||||||| || |||||
Sbjct 828 TTGCTTTGATCTAGCTACTAGTCATGAGAAAGATAGGTTTGTTAAGGTTAATGG-GAAGA 886
Query 61 CTGATTT-C--------------TT-GA--TAGGCCATGGGAAAATCCGAATCAGG-TTC 101
||||||| | || || ||||| |||||||||||||||| ||| |||
Sbjct 887 CTGATTTCCTGATAGATGATGTTTTGGATTTAGGCGATGGGAAAATCCGAAT-AGGATTC 945
Query 102 GATATTAGCAGTGGATCAGGTATATTTGCTGCTAGAATGGCTGAAAAGAATGTGAATATA 161
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 946 GATATTAGCAGTGGATCAGGTACGTTTGCTGCTAGAATGGCTGAAAAGAATGTGAATATA 1005
Query 162 ATCAGTAATACATTGAATAAAGATGCTTCTTTCAGCGAATTCGTAGCTGCGCGAGGGATT 221
||||||||||||||||||| ||||||| |||||||||||||| |||||||| |||| |||
Sbjct 1006 ATCAGTAATACATTGAATATAGATGCTCCTTTCAGCGAATTCATAGCTGCGAGAGGAATT 1065
Query 222 TTTCCGTTGTTCTTGAGTTTAGACCATAGATTACCGTTCTATGACAATGTTTTTGATCTC 281
|||||||||||| ||||||| || || |||||||||||||| ||||||||||| ||||||
Sbjct 1066 TTTCCGTTGTTCATGAGTTTGGATCAGAGATTACCGTTCTACGACAATGTTTTCGATCTC 1125
Query 282 ATACATGCTAATGCTTCTAATGGATTGGATATAGGGGCTAG-AATAAACCCGAGAAGCTG 340
|||||||| | | || || ||||||||| ||| || ||| ||||||||||||||||||
Sbjct 1126 ATACATGC-A-T-CT---AACGGATTGGATTTAGCGGTTAGTAATAAACCCGAGAAGCTG 1179
Query 341 GAGTTCTTGAAGTTTGATCTTGATCGGATCT 371
|||||||||| ||||||||||||||||||||
Sbjct 1180 GAGTTCTTGATGTTTGATCTTGATCGGATCT 1210
> AT5G40820.1 | Symbols: ATRAD3, ATR, ATATR | Ataxia telangiectasia-mutated
and RAD3-related | chr5:16342745-16353898 REVERSE
LENGTH=9189
Length=9189
Score = 348 bits (188), Expect = 2e-95
Identities = 330/393 (84%), Gaps = 31/393 (8%)
Strand=Plus/Plus
Query 1 TTGCTTTGATCTAGCTGCTACTCATGAGAAAGATAGGTTTGTTAAGGTTAAAGGTGAAGA 60
|||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 8414 TTGCTTTGATCTAGCT-CTGGTCATGAGAAAGATAGGTTTGTTAAGGTTAAA-GTGAAGA 8471
Query 61 CTGATTT-C---T---TGA----------TAGGCCATGGGAAAATCCGAATCAGG-TTCG 102
||||||| | | ||| ||||| ||||||||||||||||| || ||||
Sbjct 8472 CTGATTTCCTGATAGATGATGTTTGGGTTTAGGCGATGGGAAAATCCGAATC-GGATTCG 8530
Query 103 ATATTAGCAGTGGATCAGGTATATTTGCTGCTAGAATGGCTGAAAAGAATGTGAATATAA 162
|||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||| |
Sbjct 8531 ATATTAGCAGCGGATCAGGCACGTTTGCTGCTAGAATGGCTGAAAAGAATCTGAATATTA 8590
Query 163 TCAGTAATACATTGAATAAAGATGCTTCTTTCAGCGAATTCGTAGCTGCGCGAGGGATTT 222
|| ||| |||||| |||| ||||||| |||||||||||||| ||||| | |||||||||
Sbjct 8591 TCGGTATTACATTAAATATAGATGCTCCTTTCAGCGAATTCATAGCTACAAGAGGGATTT 8650
Query 223 TTCCGTTGTTCTT-G--AGTTTAGACCATAGATTACCGTTCTATGACAATGTTTTTGATC 279
||||||||||| | ||||| || | ||||| |||||||||||||||||||||||||
Sbjct 8651 TTCCGTTGTTCAGAGGGAGTTTGGATTAGAGATTCCCGTTCTATGACAATGTTTTTGATC 8710
Query 280 TCATACATGCTAATGCTTCTAATGGATTGGATATAGGGGCTAGAA-TAAACCCGAGAAGC 338
|||| | | | ||||||||| ||||||||| ||| || ||| | ||||||||||||||
Sbjct 8711 TCAT---T-C-A-TGCTTCTAACGGATTGGATTTAGCGGTTAGTAGTAAACCCGAGAAGC 8764
Query 339 TGGAGTTCTTGAAGTTTGATCTTGATCGGATCT 371
| |||||||||| ||||||||||||||||||||
Sbjct 8765 TAGAGTTCTTGATGTTTGATCTTGATCGGATCT 8797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17442908903
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5