BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947660
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40810.1 | Symbols: | Cytochrome C1 family | chr5:16339893-... 1587 0.0
AT3G27240.1 | Symbols: | Cytochrome C1 family | chr3:10055789-... 1125 0.0
> AT5G40810.1 | Symbols: | Cytochrome C1 family | chr5:16339893-16342644
FORWARD LENGTH=1380
Length=1380
Score = 1587 bits (859), Expect = 0.0
Identities = 930/965 (96%), Gaps = 1/965 (0%)
Strand=Plus/Plus
Query 1 TTGGTTACAAGTGTTTATCAAATGGTTGGAGGAGGAGTTATCCAGCAGCTTCTTAGAAGG 60
|||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 TTGG-TACAAGTGTTCATCCAATGGTTGGAGGAGGAGTTATCCGGCAGCTTCTTAGAAGG 178
Query 61 AAACTTCATTCCCAATCAGTCGCAACTCCGGTATTGTCATGGTTATCTTCGAAGAAAGCT 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 179 AAACTTCATTCCCAATCAGTCGCAACTCCGGTATTGTCATGGTTGTCTTCGAAGAAAGCG 238
Query 121 AATGAAGATGCTGGGTCTGCTGGTTTAAGAGCATTTGCTCTCATGGGTGCTGGTATTACA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 AATGAAGATGCTGGGTCTGCTGGTTTAAGAGCATTTGCTCTCATGGGTGCTGGTATTACC 298
Query 181 GGATTATTGAGTTTTTCTACTGTTGCATCCGCTGATGAGGCCGAACATGGTTTGGAGTGT 240
||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 299 GGATTATTGAGTTTTTCTACTGTTGCATCTGCTGATGAGGCTGAACATGGTCTGGAGTGT 358
Query 241 CCTAACTACCCTTGGCCACATGAGGGCATTCTCAGCTCATATGACCATGCTTCGATCCGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CCTAACTACCCTTGGCCACATGAGGGCATTCTCAGCTCATATGACCATGCTTCGATCCGT 418
Query 301 CGTGGTCACCAAGTTTATCAGCAAGTCTGTGCATCTTGCCATTCGATGTCTCTGATCTCA 360
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 419 CGTGGTCACCAAGTTTATCAGCAAGTTTGTGCGTCTTGCCATTCGATGTCTCTGATCTCA 478
Query 361 TACCGAGACTTGGTTGGTGTTGCCTACACAGAGGAAGAGGCTAAGGCAATGGCAGCTGAA 420
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 479 TACCGAGACTTGGTGGGTGTTGCCTACACAGAGGAAGAGGCGAAGGCCATGGCAGCTGAA 538
Query 421 ATTGAGGTTGTTGATGGACCAAATGATGAGGGTGAGATGTTTACCAGACCTGGTAAACTC 480
|| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 539 ATCGAGGTTGTTGATGGACCAAATGATGAGGGTGAGATGTTCACCCGACCTGGTAAACTC 598
Query 481 AGTGATCGGCTTCCTGAACCATATTCAAATGAATCAGCTGCAAGGTTCGCCAATGGAGGA 540
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 599 AGTGATCGGCTTCCTGAACCATACTCAAATGAATCGGCTGCTAGGTTCGCCAATGGAGGA 658
Query 541 GCGTATCCACCTGATCTAAGTCTTGTTACTAAGGCACGTCACAATGGCCAAAATTATGTC 600
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 659 GCGTATCCACCGGATCTAAGTCTTGTAACTAAGGCACGTCACAATGGCCAAAATTATGTC 718
Query 601 TTTGCTCTGTTGACTGGTTACCGTGATCCTCCAGCTGGAATTTCGATCAGAGAGGGGTTA 660
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 719 TTTGCTCTGTTGACTGGTTATCGTGATCCTCCTGCTGGAATTTCGATCAGAGAGGGGCTA 778
Query 661 CACTACAATCCTTATTTCCCTGGTGGAGCAATCGCTATGCCAAAGATGCTCAACGATGAA 720
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 779 CACTACAATCCTTATTTCCCTGGTGGAGCAATCGCTATGCCAAAAATGCTCAACGATGAA 838
Query 721 GCTGTGGAATATGAAGATGGAACTCCAGCAACAGAAGCACAGATGGGTAAGGATGTTGTA 780
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 839 GCTGTGGAATATGAAGATGGAACTCCTGCAACAGAAGCACAGATGGGTAAAGATGTTGTA 898
Query 781 TCATTCTTGTCCTGGGCAGCTGAACCAGAAATGGAAGAGAGAAAATTGATGGGTTTCAAA 840
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 899 TCCTTCTTGTCCTGGGCAGCTGAACCAGAGATGGAAGAGAGGAAATTGATGGGGTTCAAA 958
Query 841 TGGATATTCTTACTGTCTTTGGCTCTGCTTCAAGCTGCGTATTACAGGAGACTGAAATGG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGGATATTCTTACTGTCTTTGGCTCTGCTTCAAGCTGCGTATTACAGGAGACTGAAATGG 1018
Query 901 TCAGTACTCAAATCCCGTAAGCTTGTTCTCGACGTTGTCAACTAATCCCGTGAAGATCAG 960
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1019 TCAGTACTCAAATCCCGTAAGCTTGTTCTCGACGTTGTTAACTAATCCCGTGAAGATCAC 1078
Query 961 CTTTT 965
|||||
Sbjct 1079 CTTTT 1083
> AT3G27240.1 | Symbols: | Cytochrome C1 family | chr3:10055789-10058716
REVERSE LENGTH=1414
Length=1414
Score = 1125 bits (609), Expect = 0.0
Identities = 841/953 (88%), Gaps = 16/953 (2%)
Strand=Plus/Plus
Query 1 TTGGTTAC-AAGTGTTT-ATCAAATGGTTGGAGGAGGAGTTATCCAGCAGCTTCTTAGAA 58
|||| ||| ||| |||| ||||||||||||||||||||||||||||||| ||||||| |
Sbjct 115 TTGG-TACAAAG-GTTTAATCAAATGGTTGGAGGAGGAGTTATCCAGCAAATTCTTAGGA 172
Query 59 GGAAACTTCATTCCCAATCAGTCGCAACTCCGGTATTGTCATGGTTATCTTCGAAGAAAG 118
|||| ||||| ||||||||| | ||||||||||| ||||| ||||| |||||||||||||
Sbjct 173 GGAAGCTTCACTCCCAATCACTTGCAACTCCGGTTTTGTCTTGGTTTTCTTCGAAGAAAG 232
Query 119 CTAATGAAGATGCTGGGTCTGCTGGTTTAAGAGCATTTG-CTCTCATGGGTGCTGGTATT 177
|| |||| |||||||| ||| ||||| |||||||| ||| || | ||||||||||| ||
Sbjct 233 CTCATGAGGATGCTGGTTCTTCTGGTGTAAGAGCACTTGCCT-TGTTGGGTGCTGGTGTT 291
Query 178 ACAGGATTATTGAGTTTTTCTACTGTTGCATCCGCTGATGAGGCCGAACATGGTTTGGAG 237
|||||| | |||||||||||||| || ||||| ||||||||||| |||||||| ||||||
Sbjct 292 ACAGGACTGTTGAGTTTTTCTACAGTAGCATCTGCTGATGAGGCTGAACATGGATTGGAG 351
Query 238 TGTCCTA-ACTACCCTTGGCCACATGAGGGCATTCTCAGCTCATATGACCATGCTTCGAT 296
|||| | | ||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 352 AGTCC-AGAGTACCCTTGGCCTCATGATGGCATTCTTAGCTCATATGACCATGCTTCGAT 410
Query 297 CCGTCGTGGTCACCAAGTTTATCAGCAAGTCTGTGCATCTTGCCATTCGATGTCTCTGAT 356
||||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 411 CCGTCGTGGGCATCAAGTTTATCAGCAAGTCTGTGCATCATGCCATTCAATGTCTCTGAT 470
Query 357 CTCATACCGAGACTTGGTTGGTGTTGCCTACACAGAGGAAGAGGCTAAGGCAATGGCAGC 416
|||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 471 CTCATACCGAGACTTGGTGGGTGTCGCCTACACAGAGGAAGAGGCAAAGGCAATGGCAGC 530
Query 417 TGAAATTGAGGTTGTTGATGGACCAAATGATGAGGGTGAGATGTTTACCAGACCTGGTAA 476
|||||| ||||| || |||||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 531 TGAAATCGAGGTAGTAGATGGACCTAATGATGAGGGTGAGATGTTCACCCGCCCTGGTAA 590
Query 477 ACTCAGTGATCGGCTTCCTGAACCATATTCAAATGAATCAGCTGCAAGGTTCGCCAATGG 536
||||||||| ||| ||||| | |||||| |||||||||||||||||||||| || |||||
Sbjct 591 ACTCAGTGACCGGTTTCCTCAGCCATATGCAAATGAATCAGCTGCAAGGTTTGCTAATGG 650
Query 537 AGGAGCGTATCCACCTGATCTAAGTCTTGTTACTAAGGCACGTCACAATGG-CCAAAATT 595
||||||||||| ||||||||||||||| | |||||||||||||||||||| || ||| |
Sbjct 651 TGGAGCGTATCCTCCTGATCTAAGTCTTATAACTAAGGCACGTCACAATGGTCC-AAACT 709
Query 596 ATGTCTTTGCTCTGT-TGACTGGTTACCGTGATCCTCCAGCTGGAATTTCGATCAGAGAG 654
|||||||||| || | ||||||||||||||||||| || ||||| || ||||| ||||||
Sbjct 710 ATGTCTTTGCGCT-TCTGACTGGTTACCGTGATCCCCCTGCTGGCATATCGATTAGAGAG 768
Query 655 GGGTTACACTACAATCCTTATTTCCCTGGTGGAGCAATCGCTATGCC-AAAGATGCTCAA 713
||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||
Sbjct 769 GGGTTACACTACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAA-ATGCTCAA 827
Query 714 CGATGAAGCTGTGGAATATGAAGATGGAA-CTCCAGCAACAGAAGCACAGATGGGTAAGG 772
||||||||||| || ||||||||||| | || || ||||| |||||||||||||| |
Sbjct 828 TGATGAAGCTGTTGAGTATGAAGATGGTGTCCCC-GCCACAGAGGCACAGATGGGTAAAG 886
Query 773 ATGTTGTATCATTCTTGTCCTGGGCAGCTGAACCAGAAATGGAAGAGAGAAAATTGATGG 832
|| |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 887 ATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGGAAGAGAGGAAACTGATGG 946
Query 833 GTTTCAAATGGATATTCTTACTGTCTTTGGCTCTGCTTCAAGCTGCGTATTACAGGAGAC 892
||||||||||||||||| |||| ||| | ||||| || |||||||| || |||||| |||
Sbjct 947 GTTTCAAATGGATATTCCTACTCTCTCTCGCTCTTCTCCAAGCTGCTTACTACAGGCGAC 1006
Query 893 TGAAATGGTCAGTACTCAAATCCCGTAAGCTTGTTCTCGACGTTGTCAACTAA 945
| |||||||| || ||||| ||||| ||||| ||||| ||||| || ||||||
Sbjct 1007 TAAAATGGTCGGTTCTCAAGTCCCGCAAGCTGGTTCTTGACGTGGTTAACTAA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5