BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947662
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1343 0.0
> AT5G40790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G27250.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:16330115-16331026 REVERSE LENGTH=912
Length=912
Score = 1343 bits (727), Expect = 0.0
Identities = 849/908 (94%), Gaps = 7/908 (1%)
Strand=Plus/Plus
Query 30 AACGGAAAGCAGCGGCAAGCTTCTGTTTGCGACGGTGCTACAGATCAAGACAAGACTGTT 89
|||||||||||| | ||||||||| ||||||||||||| |||||||| |||||||| |||
Sbjct 10 AACGGAAAGCAGTGTCAAGCTTCTATTTGCGACGGTGCAACAGATCAGGACAAGACCGTT 69
Query 90 ATAAGCAAGATAATGCAACGGTTCCGTCCGATCGCGCCAAAACCAGCTGTCGGTGAATCT 149
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 70 ATAAGCAAGATAATGCAACGGTTCCGTCCGATCGCACCAAAACCAGCTGTCGGCGAATCT 129
Query 150 TCCGACGATGCAAAGAGTAG-CAGATTCCTTGGAAGAAACAGAAGATCGAAACGAAAGTA 208
|| |||||| |||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 130 TCAGACGATACAAATAGT-GATAGATTCCTTGGAAGAAACAGAAGATCGAAACGAAAGTA 188
Query 209 TGTTAGGGTTCGGGATaa-aaaaaCTAGTAGTGTTAGTAATAATAAGAATAAGATCACCG 267
||||||||||||||| || ||||| |||||||| ||||||||||||||| | || || |
Sbjct 189 TGTTAGGGTTCGGGACAAGAAAAA-TAGTAGTGGTAGTAATAATAAGAAGGATATTACTG 247
Query 268 GTAAAAAGAATGGTTGCGATAGAGGGAACTTAAAGAATCCCAATCTCGATAAAGAGATAG 327
||||||||||||||||||||||||||||| ||||| | || |||| |||||| ||||||
Sbjct 248 GTAAAAAGAATGGTTGCGATAGAGGGAACATAAAG-A--CCGATCTTGATAAAAAGATAG 304
Query 328 ACGGTGATGATAGAAGCGATATCGTCACGCTTGAGTTGCTCCCGGAGAAGGATAGAGATC 387
||||||||||||||| |||||||||||||||| || |||| || |||||||||||||||
Sbjct 305 ACGGTGATGATAGAACCGATATCGTCACGCTTCAGCTGCTGCCAGAGAAGGATAGAGATA 364
Query 388 TAGGAAACAATGGAGACCAAGCTGGTGAGTTTTGTTCGGATCTGAGTGATATGGATCCAA 447
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TAGGAAACAATGGAGATAAAGCTGGTGAGTTTTGTTCGGATCTGAGTGATATGGATCCAA 424
Query 448 AGAATAGTTTGTATGGTTCGATCATAGGGCTATCGTCATCTTTAGATCAGACGGTGGTGG 507
| || || |||||| ||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 425 AAAAGAGCTTGTATAATTCGATCATAGGGCTATCGTCATCTTTTGATCGGAAGGTGGTGG 484
Query 508 AGTCGTGGTTGACGGTGGAGTGTGTGAGTGACACGTGTGCTGACTTGGGAGGGTATCACA 567
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 485 AGTCGTGGTTGACGGTGGAGTGTGTGAGTGACACGTGTACTGACTTGGGATGGTATCACA 544
Query 568 TCCTGGAGCAGCTAGGCCGTATGGATCAGGGAGAAGAGAGAGTGATGAGGATGTTAGAGG 627
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 545 TCCTGGAGCAGCTAGGCCGCATGGATCAGGCAGAGGAGAGAGTGATGAGGATGTTAGAGG 604
Query 628 TTGACACGTGTCCATGGTTAGTGTCGGATGGGTCAAACCGGGTCTGTTGGGTAAACCGGG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TTGACACGTGTCCATGGTTAGTGTCGGATGGGTCAAACCGGGTCTGTTGGGTAAACCGGG 664
Query 688 CGTACCGGAGGATGATGGGAGCTCCGGACGTGGAGGTTATCAGGGTATGGCTGGGGGTGG 747
| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |||||
Sbjct 665 CCTACCGGAGGATGATGGGAGCTCCCGACGTGGATGTTATCAGGGTGTGGCTGGTGGTGG 724
Query 748 CCATGAACCTTATGGAGGAGATAGCATGCATGGTGGAGTTATACGGTGCGGTGACGTGCA 807
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 CCATGGACCTTATGGAGGAGATAGCATGCATGGTGGAGTTATACGGTGCGGTGACGTGCA 784
Query 808 GGGTTAGGGTTAGGTACGAGCCGTCCACGTGGAGGAAGATGACTGTGCCGTGTGATGTAT 867
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 785 GGGTTAGGGTTAGGTACGAGCCGTCCACGTGGAGGAAGATGACGGTGCCGTGTGATGTAT 844
Query 868 GGAGGATTAGATCAGGTGGGTTTGCTTGGAGATTGGATGTTGAATCAGCTCTAAGGCTTG 927
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GGAGGATAAGATCAGGTGGGTTTGCTTGGAGATTGGATGTTGAATCAGCTCTAAGGCTTG 904
Query 928 GCATGTGA 935
||||||||
Sbjct 905 GCATGTGA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5