BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947683

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40630.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   861    0.0  


> AT5G40630.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr5:16271140-16272470 REVERSE LENGTH=801
Length=801

 Score =  861 bits (466),  Expect = 0.0
 Identities = 517/540 (96%), Gaps = 9/540 (2%)
 Strand=Plus/Plus

Query  7    aaaGAAagagagagagagaATGGGAAAGTTAATGGCAAAGAGGTTTTGCATTGGGTTTGG  66
            ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  23   AAAGAGAGAGAGAAAGATAATGGGAAAGTTAATGGCAAAGAGGTTTTGCATTGGGTTTGG  82

Query  67   ATGTGGAAGAATTGGGACGGGCAACAACAAAAGatcatcatcatcttcttcttcttc-t-  124
             |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | 
Sbjct  83   GTGTGGAAGAATTGGGACGGGCAACAATAAAAGATCATCATCTTCTTCTTCTTCTTCATC  142

Query  125  -tcatcatcatcattatcatcatca------tcttcatcttcatcatGTAACAATAACAA  177
             ||||  ||||||||||||||||||      |||||||| ||||||||||||||||||||
Sbjct  143  GTCATTTTCATCATTATCATCATCATCTTCTTCTTCATCGTCATCATGTAACAATAACAA  202

Query  178  CATAAAATGGGAGATGAGGCCTGGAGGGATGCTGGTTCAGAAGAGATCAGAAGATTCTAA  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  203  CATAAAATGGGAGATGAGGCCTGGAGGGATGCTGGTTCAGAAGAGATCAGAAGATTCTAA  262

Query  238  CACTGAAGATCTAATCAGCCTTAGAGTCTCCACTGTTTCTCAGCTTTCATATGAAATCTC  297
            |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  263  CACTGAAGATTTAATCAGCCTTAGAGTCTCCACTGTCTCTCAGCTTTCATATGAAATCTC  322

Query  298  CATTGATGCCAACTCCACTTTCGGTGAATTGAAGATGATGATAGCAATAGTGAGTGGAAT  357
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  323  CATTGATGCCAACTCTACTTTCGGTGAATTGAAGATGATGATAGCAATAGTGAGTGGAAT  382

Query  358  TGAGGCAAAAGAGCAAAGACTATTGTTCAGAGGAAAGGAAAGAGAAGACAGAGAATACTT  417
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  383  TGAGGCAAAAGAGCAAAGACTCTTGTTCAGAGGAAAGGAAAGAGAAGACAGAGAATACTT  442

Query  418  ACACATGATTGGTGTTGGAGATGGAGATAAGGTCTTTTTATTACAAGATCCTGCTTTTAA  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  ACACATGATTGGTGTTGGAGATGGAGATAAGGTCTTTTTATTACAAGATCCTGCTTTTAA  502

Query  478  GGAGTTGAAACATATTCATCTCCCAATTACTGTCTAATTAATTCCTTACTTTATTAATTG  537
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  503  GGAGTTGAAACATATTCATCTCCCAATTACTGTCTAACTAATTCCTTACTTTATTAATTG  562



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25719883264


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5