BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947691

Length=966
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40750.1 | Symbols:  | FBD / Leucine Rich Repeat domains con...   231    7e-60


> AT5G40750.1 | Symbols:  | FBD / Leucine Rich Repeat domains containing 
protein | chr5:16308356-16309819 FORWARD LENGTH=894
Length=894

 Score =  231 bits (125),  Expect = 7e-60
 Identities = 143/151 (95%), Gaps = 3/151 (2%)
 Strand=Plus/Plus

Query  811  AGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAGTGGAATAAAAAGAAGATAATGAAGG  870
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  713  AGAGAGCTGGAATCTCTTTGAAATCAACCTGGAAATGGAATAAAAAGAAGATAATGAAGG  772

Query  871  AGTTAAAATCCATGTATAGGATTTCAACAACATGTCAGCTTCTCTTCTCCACTCAACTGG  930
            |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct  773  AGTTGAAATCCATGTATAGGATATCAACAACATCTCAGCTTCTCTTCTCCACTCAACTGG  832

Query  931  AGTTTGAGCCTT-GATGGACTCCATTT-GAA  959
            ||||| |||||| | |||||||||||| |||
Sbjct  833  AGTTTAAGCCTTTG-TGGACTCCATTTAGAA  862



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47270332327


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5