BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947694 Length=563 Score E Sequences producing significant alignments: (Bits) Value AT5G40540.1 | Symbols: | Protein kinase superfamily protein | ... 857 0.0 > AT5G40540.1 | Symbols: | Protein kinase superfamily protein | chr5:16237298-16239601 FORWARD LENGTH=1525 Length=1525 Score = 857 bits (464), Expect = 0.0 Identities = 518/544 (95%), Gaps = 3/544 (1%) Strand=Plus/Plus Query 13 ACCGAGATGATGACTGCAGAAACTGGTACATATCGTTGGATGGCTCCCGAGCTTTACAGT 72 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 867 ACCGAGATGATGACCGCAGAAACTGGTACATATCGTTGGATGGCTCCCGAGCTTTACAGT 926 Query 73 ACGGTCACATTGAGGCATGGCGAGAAAAAACACTATAACCATAAGGTTGATGCATACAGC 132 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 927 ACGGTCACGTTGAGGCATGGTGAGAAAAAACACTATAACCATAAGGTAGATGCATACAGC 986 Query 133 TTCGCCATCGTCTTGTGGGAGCTTATCCACAACAAGTTACCTTTTGAAGGCATGTCAAAT 192 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 987 TTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAAT 1046 Query 193 CTCCAAGCCGCTTATGCCGCTGCATTCAAGAACGTGAGGCCGAGCGCAGACGATTTACCG 252 |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 1047 CTCCAAGCCGCTTACGCTGCTGCATTCAAGAACGTGAGGCCAAGCGCAGACGATTTACCA 1106 Query 253 AAGGATTTAGCAATGATCGTAACATCTTGCTGGAAAGAGGATCCAAATGATCGACCAAAC 312 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 1107 AAGGATTTAGCAATGATTGTAACATCTTGCTGGAAAGAGGATCCAAACGATCGACCAAAC 1166 Query 313 TTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCAGCAACTGAGCTT 372 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1167 TTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCATCAACTGAGCTT 1226 Query 373 GTTCCTCCGTCCATTAAACGTGTATTCTCGTCGGAAAACACAGTATTGCCACCAGAATCG 432 ||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||| Sbjct 1227 GTTCCTCCGGCCATTAAACGTGTTTTCTCGTCGGAAAACACGGTCTTGCCACCAGAATCG 1286 Query 433 CCGGGAACTTGCTCATTGATGGCTGTTAGAGACGGAGATCAGATTCCTACGGATGCAAAC 492 ||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| Sbjct 1287 CCGGGAACTTGCTCATTGATGACTGTTAGAGACAAAGATCAGATTCCTACCGATGCAAAC 1346 Query 493 TCGCCGCAGAAAGAAGTTAGAGGAAGcttcttcttcttcttctGCTGCTAATATTTGATT 552 ||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1347 TCGGCGCAGAATGAAGTTAGAGGAAGCTTCTTCTTCTTCT---GCTGCTAATATTTGATT 1403 Query 553 TATT 556 |||| Sbjct 1404 TATT 1407 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27025971086 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5