BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947694

Length=563
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40540.1 | Symbols:  | Protein kinase superfamily protein | ...   857    0.0  


> AT5G40540.1 | Symbols:  | Protein kinase superfamily protein 
| chr5:16237298-16239601 FORWARD LENGTH=1525
Length=1525

 Score =  857 bits (464),  Expect = 0.0
 Identities = 518/544 (95%), Gaps = 3/544 (1%)
 Strand=Plus/Plus

Query  13    ACCGAGATGATGACTGCAGAAACTGGTACATATCGTTGGATGGCTCCCGAGCTTTACAGT  72
             |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  867   ACCGAGATGATGACCGCAGAAACTGGTACATATCGTTGGATGGCTCCCGAGCTTTACAGT  926

Query  73    ACGGTCACATTGAGGCATGGCGAGAAAAAACACTATAACCATAAGGTTGATGCATACAGC  132
             |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct  927   ACGGTCACGTTGAGGCATGGTGAGAAAAAACACTATAACCATAAGGTAGATGCATACAGC  986

Query  133   TTCGCCATCGTCTTGTGGGAGCTTATCCACAACAAGTTACCTTTTGAAGGCATGTCAAAT  192
             |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  987   TTCGCCATTGTCTTGTGGGAGCTTATCCACAACAAATTACCTTTTGAAGGCATGTCAAAT  1046

Query  193   CTCCAAGCCGCTTATGCCGCTGCATTCAAGAACGTGAGGCCGAGCGCAGACGATTTACCG  252
             |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||| 
Sbjct  1047  CTCCAAGCCGCTTACGCTGCTGCATTCAAGAACGTGAGGCCAAGCGCAGACGATTTACCA  1106

Query  253   AAGGATTTAGCAATGATCGTAACATCTTGCTGGAAAGAGGATCCAAATGATCGACCAAAC  312
             ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1107  AAGGATTTAGCAATGATTGTAACATCTTGCTGGAAAGAGGATCCAAACGATCGACCAAAC  1166

Query  313   TTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCAGCAACTGAGCTT  372
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  1167  TTCACAGAGATTATTCAAATGCTTCTACGTTGCCTCTCCACAATCTCATCAACTGAGCTT  1226

Query  373   GTTCCTCCGTCCATTAAACGTGTATTCTCGTCGGAAAACACAGTATTGCCACCAGAATCG  432
             ||||||||| ||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct  1227  GTTCCTCCGGCCATTAAACGTGTTTTCTCGTCGGAAAACACGGTCTTGCCACCAGAATCG  1286

Query  433   CCGGGAACTTGCTCATTGATGGCTGTTAGAGACGGAGATCAGATTCCTACGGATGCAAAC  492
             ||||||||||||||||||||| |||||||||||  ||||||||||||||| |||||||||
Sbjct  1287  CCGGGAACTTGCTCATTGATGACTGTTAGAGACAAAGATCAGATTCCTACCGATGCAAAC  1346

Query  493   TCGCCGCAGAAAGAAGTTAGAGGAAGcttcttcttcttcttctGCTGCTAATATTTGATT  552
             ||| ||||||| ||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct  1347  TCGGCGCAGAATGAAGTTAGAGGAAGCTTCTTCTTCTTCT---GCTGCTAATATTTGATT  1403

Query  553   TATT  556
             ||||
Sbjct  1404  TATT  1407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27025971086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5