BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947699

Length=200
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40480.1 | Symbols: EMB3012 | embryo defective 3012 | chr5:1...  84.2    4e-16


> AT5G40480.1 | Symbols: EMB3012 | embryo defective 3012 | chr5:16213222-16224058 
FORWARD LENGTH=5987
Length=5987

 Score = 84.2 bits (45),  Expect = 4e-16
 Identities = 53/57 (93%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  89    GCCACTACTCAACTCTGCTTCCACAAGGTTCTGAAAATACTCTCACCGATGATGTAC  145
             |||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||
Sbjct  2907  GCCAATACTCAACTCTGCTTCCACAAGGTTCTGAAAGTACTCTCACTGATGCTGTAC  2963



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8903339127


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5