BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg947705 Length=379 Score E Sequences producing significant alignments: (Bits) Value AT5G40460.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 544 3e-154 > AT5G40460.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16202247-16202932 FORWARD LENGTH=686 Length=686 Score = 544 bits (294), Expect = 3e-154 Identities = 351/378 (93%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 4 GAGATAGTTCAAGAGAGATGGGTCTTTCGAAGAAATCTCAATTTGACGGAGGTTTAGATT 63 ||| ||||| ||||||||||||| ||||||||||||||||||| || ||||||||||| | Sbjct 202 GAGTTAGTTAAAGAGAGATGGGTTTTTCGAAGAAATCTCAATTCGAAGGAGGTTTAGAAT 261 Query 64 CTGACGGGAAGAAATGGGTTATCGCCGGAATTTCGGTTCGGGCTTCGTTGAAACCAGTGA 123 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 262 CCGACGGGAAGAAATGGGTTATCGCCGGAATTTCGATTCGGGCTTCGTTGAAACCAGTCA 321 Query 124 AGACGAAACACAAAGCGCCGCCGGAGAAAGAAG-CCGAAGTTGAAGAAGATTGCTACAAT 182 ||||||||| || |||||||||||||| || | ||||||||||||||||||||||||| Sbjct 322 AGACGAAACTCAGAGCGCCGCCGGAGATAG-TGACCGAAGTTGAAGAAGATTGCTACAAC 380 Query 183 GAAGAGGAAGAGTGTTCGACGACACCGACAGCGAAGGAAACGAAGATACCGGAGATATTG 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 381 GAAGAGGAAGAGTGTTCGACGACACCGACAGCGAAGGAAACGAAGATACCGGAGTTATTG 440 Query 243 GAATGTCCACCGGCACCCAGAAAACGACGGCCGGCGTTAAAATGTCGGAGTAACG-CTGT 301 ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | || Sbjct 441 GAATGTCCACCAGCACCGAGAAAACGACGGCCGGCGTTAAAATGTCGGAGTAACGTC-GT 499 Query 302 TATAGAGTTCTTTACGCCTCCTTCTGATTTAGAGACGGTGTTTATACGGCGCCGTTAGTG 361 || |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 500 TAGAGAGTTTTTTACGCCTCCTTCTGATTTAGAGACGGTGTTTCTACGTCGCCGTTAGTG 559 Query 362 AG-TTTAGAGtttttttt 378 || ||| ||||||||||| Sbjct 560 AGATTT-GAGTTTTTTTT 576 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17845050895 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5