BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947705

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40460.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   544    3e-154


> AT5G40460.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G27630.1); 
Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:16202247-16202932 
FORWARD LENGTH=686
Length=686

 Score =  544 bits (294),  Expect = 3e-154
 Identities = 351/378 (93%), Gaps = 6/378 (2%)
 Strand=Plus/Plus

Query  4    GAGATAGTTCAAGAGAGATGGGTCTTTCGAAGAAATCTCAATTTGACGGAGGTTTAGATT  63
            ||| ||||| ||||||||||||| ||||||||||||||||||| || ||||||||||| |
Sbjct  202  GAGTTAGTTAAAGAGAGATGGGTTTTTCGAAGAAATCTCAATTCGAAGGAGGTTTAGAAT  261

Query  64   CTGACGGGAAGAAATGGGTTATCGCCGGAATTTCGGTTCGGGCTTCGTTGAAACCAGTGA  123
            | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct  262  CCGACGGGAAGAAATGGGTTATCGCCGGAATTTCGATTCGGGCTTCGTTGAAACCAGTCA  321

Query  124  AGACGAAACACAAAGCGCCGCCGGAGAAAGAAG-CCGAAGTTGAAGAAGATTGCTACAAT  182
            ||||||||| || |||||||||||||| ||  | ||||||||||||||||||||||||| 
Sbjct  322  AGACGAAACTCAGAGCGCCGCCGGAGATAG-TGACCGAAGTTGAAGAAGATTGCTACAAC  380

Query  183  GAAGAGGAAGAGTGTTCGACGACACCGACAGCGAAGGAAACGAAGATACCGGAGATATTG  242
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  381  GAAGAGGAAGAGTGTTCGACGACACCGACAGCGAAGGAAACGAAGATACCGGAGTTATTG  440

Query  243  GAATGTCCACCGGCACCCAGAAAACGACGGCCGGCGTTAAAATGTCGGAGTAACG-CTGT  301
            ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct  441  GAATGTCCACCAGCACCGAGAAAACGACGGCCGGCGTTAAAATGTCGGAGTAACGTC-GT  499

Query  302  TATAGAGTTCTTTACGCCTCCTTCTGATTTAGAGACGGTGTTTATACGGCGCCGTTAGTG  361
            || |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct  500  TAGAGAGTTTTTTACGCCTCCTTCTGATTTAGAGACGGTGTTTCTACGTCGCCGTTAGTG  559

Query  362  AG-TTTAGAGtttttttt  378
            || ||| |||||||||||
Sbjct  560  AGATTT-GAGTTTTTTTT  576



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17845050895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5