BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947719

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G00753.1 | Symbols:  | Pseudogene of AT5G37890; seven in abs...   191    4e-48


> AT4G00753.1 | Symbols:  | Pseudogene of AT5G37890; seven in absentia 
(SINA) protein, putative | chr4:322364-323033 FORWARD 
LENGTH=670
Length=670

 Score =  191 bits (103),  Expect = 4e-48
 Identities = 121/129 (94%), Gaps = 3/129 (2%)
 Strand=Plus/Plus

Query  154  TTCAGTGTGATAATGGACATGTAGCTTGCCGTTTTTGCTGGCCCAAACTCGGGAAA-AAA  212
            ||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| |||
Sbjct  5    TTCAGTGTGATAATGGACATGTAGCTTGCGGTTTTTGCTGGCTCAAACTCGG-AAAGAAA  63

Query  213  TGTCCTGCATGTGTTTTACCCATTGGTAACAAACGTTGCATAGCAATGGAGAGTGTTCTC  272
            ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct  64   TGTCCTGCATGTGCTTTACCCATTGGAAACAAACGTTGCAAAGCAATGGAGAGTGTTCTC  123

Query  273  AAATCCAGT  281
            ||||| |||
Sbjct  124  AAATC-AGT  131



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5