BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947726

Length=376
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40370.2 | Symbols:  | Glutaredoxin family protein | chr5:16...   518    2e-146


> AT5G40370.2 | Symbols:  | Glutaredoxin family protein | chr5:16147594-16149198 
REVERSE LENGTH=941
Length=941

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 296/304 (97%), Gaps = 0/304 (0%)
 Strand=Plus/Plus

Query  70   TTTTCAGCAAGACTTATTGTCCGTATTGCGTGAGAGTGAAGGAGCTTTTGCAACAATTGG  129
            ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  423  TTTGCAGCAAGACTTATTGTCCATATTGCGTGAGAGTGAAGGAGCTTTTGCAACAATTGG  482

Query  130  GAGCTAAATTCAAGGCCGTTGAGCTCGACACCGAAAGTGATGGTAGCCAAATTCAATCAG  189
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  483  GAGCTAAGTTCAAGGCCGTTGAGCTCGACACCGAAAGTGATGGTAGCCAAATTCAATCAG  542

Query  190  CTCTCGCAGAATGGACAGGACAACGCACCGTGCCTAATGTGTTTATAGGAGGAAATCACA  249
             |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  543  GTCTCGCAGAATGGACAGGACAACGTACCGTGCCTAATGTGTTTATAGGAGGAAATCACA  602

Query  250  TCGGTGGCTGCGATGCAACAACAAACTTGCATAAAGATGGGAAGTTGGTTCCGCTGTTAA  309
            |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  603  TCGGTGGCTGTGATGCAACATCAAACTTGCATAAAGATGGGAAGTTGGTTCCGCTGTTAA  662

Query  310  CTGAAGCTGGAGCGATCGCAGGAAAGACTGCAACAACTTCTGCTTAAGAGCACATCCATT  369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  663  CTGAAGCTGGAGCGATCGCAGGAAAGACTGCAACAACTTCTGCTTAAGAGCACATCCATA  722

Query  370  TGTG  373
            ||||
Sbjct  723  TGTG  726



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17694247648


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5