BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947731

Length=199
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G49620.1 | Symbols: KRP7, ICN6, ICK5 | Cyclin-dependent kina...   176    6e-44


> AT1G49620.1 | Symbols: KRP7, ICN6, ICK5 | Cyclin-dependent kinase 
inhibitor family protein | chr1:18365491-18366559 REVERSE 
LENGTH=789
Length=789

 Score =  176 bits (95),  Expect = 6e-44
 Identities = 122/134 (91%), Gaps = 6/134 (4%)
 Strand=Plus/Minus

Query  41   ACTTTTCTGTGAATCGTTTCTGTTCGAATCTCTCCGCCGCCGAGAAAAAGTCATCAAGCT  100
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  520  ACTTTTCTGTGAATCGTTTCTGTTCGTATCTCTCCGCCGCCGAGAAAAAGTCATCAAGCT  461

Query  101  CTGCCTGCGTCGGTGCTTTTTCCATCATATTCT-C--C---GTCTTTCTTTGATCTCTCC  154
            ||||||||||||||| |||||||||| | |||| |  |   |||||||| ||||||||| 
Sbjct  460  CTGCCTGCGTCGGTGATTTTTCCATCTTCTTCTTCTTCTCCGTCTTTCTCTGATCTCTCA  401

Query  155  TCTCCGTCGTCGCC  168
            ||||||||||||||
Sbjct  400  TCTCCGTCGTCGCC  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8853037776


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5