BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947748

Length=257
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13420.1 | Symbols: HAK5, ATHAK5 | high affinity K+ transpor...   237    4e-62


> AT4G13420.1 | Symbols: HAK5, ATHAK5 | high affinity K+ transporter 
5 | chr4:7796850-7802251 REVERSE LENGTH=2623
Length=2623

 Score =  237 bits (128),  Expect = 4e-62
 Identities = 140/146 (96%), Gaps = 0/146 (0%)
 Strand=Plus/Plus

Query  19    TAATGGGAGAGACGGAGATAACGGCGGAGAAAGAGTCTTCTTTATTTAAGAAGTTTATAG  78
             ||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct  2269  TAATGGGAGAGACCGAGATTACGGCAGAGAAAGAGTCTTCTTTGTTTAAGAAGTTTATAG  2328

Query  79    TGAACCATGCTTACAATTTCTTGAAGAAAAATTGCCGGGAAGGAGACAAAGCACTTGCGA  138
             |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  2329  TGAACCATGCTTACAATTTCTTGAAGAAGAATTGTCGGGAAGGAGACAAAGCACTTGCGA  2388

Query  139   TTCCTAGGTCGAAGCTTCTCAAGGTT  164
             ||||||||||||||||||||||||||
Sbjct  2389  TTCCTAGGTCGAAGCTTCTCAAGGTT  2414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11712385517


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5