BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947754

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40212.1 | Symbols:  | Pseudogene of AT5G40240; nodulin MtN2...   320    3e-87
  AT4G15540.1 | Symbols:  | EamA-like transporter family | chr4:8...   316    5e-86


> AT5G40212.1 | Symbols:  | Pseudogene of AT5G40240; nodulin MtN21 
family protein | chr5:16076674-16078037 REVERSE LENGTH=704
Length=704

 Score =  320 bits (173),  Expect = 3e-87
 Identities = 217/238 (91%), Gaps = 3/238 (1%)
 Strand=Plus/Plus

Query  10   GTTATACACACATGGGGTCTCCACCTGAAGGGTCCAGTCTACGTATCTTTGTTCAAGCCG  69
            ||||||||||||||||||||||||||||| |||||||| || ||||| || |||||||||
Sbjct  465  GTTATACACACATGGGGTCTCCACCTGAATGGTCCAGTGTATGTATCCTTATTCAAGCCG  524

Query  70   TTGTATATAGCAATTGTAGTCGTCATGGTTGCTATATTCATTGGCGACGCACTTCACCTT  129
            |||| ||||||| ||| ||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct  525  TTGTTTATAGCAGTTGCAGTCGTCATGGGTGCTATATTCCTTGGCGATGCACTTCACCTT  584

Query  130  GGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTATACTGTGATTTGGGGCAAA  189
               ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  585  ---AGTGTGATTGGATCAATGATATTGAGCTTTGGGTTTTATACTGTGATTTGGGGCAAA  641

Query  190  GCAAGAGAAGATGCAACCAAAACAGCAAATCTTTCTGAGTAGTCACTTTTGTTGCCTA  247
            ||||||||||||||| |||||| ||||| ||||||  || ||||||||||||||||||
Sbjct  642  GCAAGAGAAGATGCAGCCAAAATAGCAAGTCTTTCACAGCAGTCACTTTTGTTGCCTA  699


> AT4G15540.1 | Symbols:  | EamA-like transporter family | chr4:8873355-8875344 
FORWARD LENGTH=1241
Length=1241

 Score =  316 bits (171),  Expect = 5e-86
 Identities = 221/246 (90%), Gaps = 0/246 (0%)
 Strand=Plus/Plus

Query  1     TTGGGCTCAGTTATACACACATGGGGTCTCCACCTGAAGGGTCCAGTCTACGTATCTTTG  60
             |||||||||||||| |||||||||||||||||  ||||||||||||||||| |||| |||
Sbjct  814   TTGGGCTCAGTTATCCACACATGGGGTCTCCATGTGAAGGGTCCAGTCTACATATCCTTG  873

Query  61    TTCAAGCCGTTGTATATAGCAATTGTAGTCGTCATGGTTGCTATATTCATTGGCGACGCA  120
             ||||||||| ||| ||| ||||||| ||||| ||||| |||||||||| | |||||| ||
Sbjct  874   TTCAAGCCGCTGTCTATCGCAATTGCAGTCGCCATGGCTGCTATATTCCTCGGCGACACA  933

Query  121   CTTCACCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTATACTGTGATT  180
             ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  934   CTTCATCTTGGGAGTGTGATTGGATCAGTGATATTGAGCTTTGGGTTTTACACTGTGATT  993

Query  181   TGGGGCAAAGCAAGAGAAGATGCAACCAAAACAGCAAATCTTTCTGAGTAGTCACTTTTG  240
             ||||||||||||||||| ||| |||||||||||| || |  ||||||| | |||||||| 
Sbjct  994   TGGGGCAAAGCAAGAGAGGATTCAACCAAAACAGTAAGTGATTCTGAGCAATCACTTTTA  1053

Query  241   TTGCCT  246
             ||||||
Sbjct  1054  TTGCCT  1059



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5