BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947758
Length=594
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40190.1 | Symbols: | RNA ligase/cyclic nucleotide phosphod... 924 0.0
AT3G28140.1 | Symbols: | RNA ligase/cyclic nucleotide phosphod... 503 8e-142
> AT5G40190.1 | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase
family protein | chr5:16069177-16069948 REVERSE
LENGTH=772
Length=772
Score = 924 bits (500), Expect = 0.0
Identities = 564/595 (95%), Gaps = 4/595 (1%)
Strand=Plus/Plus
Query 2 ATTCCGACTTGAAACCACAGATGTCAGAAGGCTACGCAATCGAGCTTTACTTCGATCCAG 61
||||||||||| || | | |||||||||||||||||||||||||| |||||||||||||
Sbjct 82 ATTCCGACTTGGAA-TA-AAATGTCAGAAGGCTACGCAATCGAGCTATACTTCGATCCAG 139
Query 62 CACTCGAAAACCAAGTTTTGAAAGCATGGAACGCCTTCGCTCGCCGTCAAATCAGTACCA 121
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 140 CACTCGAAAACCAAGTATTGAAAGCATGGAACGTCTTCGCTCGCCGTCAAATCAGTACCA 199
Query 122 AATTGATCAACACTGAGTCTCGTCCACATATAACACTCTTCTCTACCTCTTTCTTCGATT 181
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 200 AATTGATCAACACTGAGTCTCGTCCACACATAACACTCTTCTCCACCTCCTTCTTCGATT 259
Query 182 CAACGAGACTCGAATCCGTCATCAAAAACTTCGTATCGAAGCAAGAACCAATCTCGATCT 241
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 260 CAACGAGACTCGAATCCGTCATCAAAAACTTCGTATCCAAGCAAGAACCAATCTCGATCT 319
Query 242 CGTTCTCCACTATCGGCACCTTCTCTAGCGACAACAACGTACTGTTTCTATCTCCGACAC 301
||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 320 CGTTCTCTACTATCGGTAGCTTCTCTAGCGACAACAACGTACTGTTTCTATCTCCGACTC 379
Query 302 CGTCTCTCTCGCTTCTTCAGTTACAGTCTCAGTTATGTGACACGATGAAGAAAGAATCTG 361
||||||| |||||||||||||| ||| ||||||||||||| | | |||||||||||||||
Sbjct 380 CGTCTCTATCGCTTCTTCAGTTGCAGACTCAGTTATGTGATATGTTGAAGAAAGAATCTG 439
Query 362 TTGAGATTGGTGAAGATTATCGTGTTGATTCTTGGGTTCCGTTTTGTCCTGTGGCTCTTG 421
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 440 TTGACATTGGTGAAGAGTATCGTGTTGATTCTTGGGTTCCGTTTTGTCCCGTGGCTCTTG 499
Query 422 ATGTTCCTAAGTCACGTATGGCTGAGGCTTTCTCTGTGTTGAGAGATTTGAAGCTTCCGG 481
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 ATGTTCCTAAGTCTCGTATGGCTGAGGCTTTCTCTGTGTTGAGAGATTTGAAGCTTCCGG 559
Query 482 TGAATGGTTATGGTATGGAGATTGGTCTTGTTGAGTTTTCTCCGGTTCGTGAAGTCTTCT 541
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 560 TGAATGGTTATGGTATGGAGATTGGTCTCGTTGAGTTTTCTCCTGTTCGTGAAGTCTTCT 619
Query 542 CATTTCCTCTTGGTAACACTTTGGAGTCTTGATCTGTAGT-GTTGGTTTT-ATGT 594
||||||||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct 620 CATTTCCTCTTGGTAACACTTTGGAGTCTTGATCTGTTGTTGTTGGTTTTTATGT 674
> AT3G28140.1 | Symbols: | RNA ligase/cyclic nucleotide phosphodiesterase
family protein | chr3:10470401-10471216 FORWARD
LENGTH=816
Length=816
Score = 503 bits (272), Expect = 8e-142
Identities = 486/584 (83%), Gaps = 36/584 (6%)
Strand=Plus/Plus
Query 20 AGATGTCAG-AAGGCTACGCAATCGAGCTTTACTTCGATCCAGCACTCGAAAACCAAGTT 78
||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 150 AGATGTC-GCAAGGCTACGCAATCGAGCTCTACTTCGATCCAGCACTCGAGAACCAAGTC 208
Query 79 TTGAAAGCATGGAACGCCTTCGCTCGCCGTCAAATCAGTACCAAAT-TGATCAAC-ACTG 136
|||||||| ||||||| ||||||||| ||||||||||||| || || | |||||| || |
Sbjct 209 TTGAAAGCTTGGAACGTCTTCGCTCGTCGTCAAATCAGTA-CATATCTAATCAACAAC-G 266
Query 137 AGTCTCGTCCACATATAACAC-TCTTCT---CTACCTCTTTCTTCGATTCAACGAGA-CT 191
||||||||||||| ||||| | | |||| |||| || | | |||||||||| | | ||
Sbjct 267 AGTCTCGTCCACACATAAC-CTTATTCTCAACTACTTCATCCATCGATTCAAC-AAAGCT 324
Query 192 CGAATCC-GTCATCAAAAAC-TTCGT-ATCGAAGCAAGAACCAATCTCGA-TCTCGTTCT 247
||| || ||||| ||| | ||| | ||| || |||||||||||||| | |||| ||||
Sbjct 325 TGAA-CCAATCATC-AAATCATTC-TCATCTAAACAAGAACCAATCTC-ACTCTCTTTCT 380
Query 248 CCACTATCGGCACCTTCTCTAGCGACAACAACG-TACTGTTTCTATCTCCGACACCGTCT 306
| | || || | ||| ||||| ||| |||| | | |||||||| || ||||| ||||||
Sbjct 381 CTTCAATAGGAAGCTTTTCTAGTGACGACAATGCT-CTGTTTCTTTCGCCGACGCCGTCT 439
Query 307 CTCTCGCTTCTTCAG-TTACAGTC-TCAGTTATGTGACA-CGATGAAGAAAGAATCTG-T 362
|| |||||| ||||| || ||| | |||||||||||| | ||| ||||||||| | |
Sbjct 440 CTTTCGCTTATTCAGCTT-CAG-CTTCAGTTATGTGA-AGTGATTAAGAAAGAA-GGGTT 495
Query 363 TGAGATTGGTGAAGATTATCGTGTTGATTCTTGGGTTCCGTTTTGTCCTGTGGCTCTTGA 422
||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 496 TGAGATTGGTGAAGAGTATCGTGTTGATTCTTGGGTTCCGTTTTGTTCTGTGGCTGTTGA 555
Query 423 TGTTCCTAAGTCACGTATGGCTGA-GGCTTTCTCTG-TGTTGAGAGATTTGAAGCTTCCG 480
|||||||||||||||||| |||| || ||| | || | |||||||||||||||||||
Sbjct 556 TGTTCCTAAGTCACGTATCTCTGAAGGGTTT-T-TGGTTTTGAGAGATTTGAAGCTTCTT 613
Query 481 GTGAATGGTTATGGTATGGAGATTGGTCTTGTTGAGTTTTCTCCGGTTCGTGAAGTCTTC 540
|| ||||||||| |||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 614 GTTTATGGTTATGCTATGGATATTGGTCTTGTTGAGTTTTCTCCTGTTCGTGAAGTTTTC 673
Query 541 TCATTTCCTCTTGGTAACACTTTGGAGTCTTGATCTGTAGTGTT 584
|| ||| ||||||||||| |||||| ||||||| || | ||||
Sbjct 674 TCTTTTGGTCTTGGTAACAATTTGGAATCTTGATATGAA-TGTT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28583229643
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5