BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947763

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40155.1 | Symbols:  | Defensin-like (DEFL) family protein |...   235    1e-61


> AT5G40155.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr5:16061891-16062548 FORWARD LENGTH=514
Length=514

 Score =  235 bits (127),  Expect = 1e-61
 Identities = 172/192 (90%), Gaps = 10/192 (5%)
 Strand=Plus/Plus

Query  42   GACCAAAATCAGTCGATGCAGCAGATTGCAAACATCTGGTTGGACCGTACACGGTACACG  101
            |||| ||||| ||||||   |||||||||||||| | |||| |   | || | |||||||
Sbjct  142  GACCTAAATCTGTCGAT---GCAGATTGCAAACACCCGGTT-G---G-AC-C-GTACACG  191

Query  102  GACTCATGCTTTACGGATTGCGTGTCTGGAAAATATGGATATAATTACGAATCCGCTTTT  161
            ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct  192  GACTCATGCTTTACGGATTGCGTATCTGGAAAATATGGATATAATTATGAATCCGCTTTT  251

Query  162  TGTAGACGTGACGAGACCGGAACTTGTAAAATATGTTGCTGCGAAATGATCAACGAATAG  221
            ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct  252  TGTAGCCGTGACGAGACCGGAACTTGTAAAATATGTTGCTGCGAACTTATCAACGAATAG  311

Query  222  GTGCATGTGCAT  233
            |||||| |||||
Sbjct  312  GTGCATATGCAT  323



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10908101533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5