BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947764
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40150.1 | Symbols: | Peroxidase superfamily protein | chr5... 1554 0.0
AT3G28200.1 | Symbols: | Peroxidase superfamily protein | chr3... 538 4e-152
> AT5G40150.1 | Symbols: | Peroxidase superfamily protein | chr5:16059509-16061043
REVERSE LENGTH=1535
Length=1535
Score = 1554 bits (841), Expect = 0.0
Identities = 956/1012 (94%), Gaps = 5/1012 (0%)
Strand=Plus/Plus
Query 1 GTTCTCAATCT-CCTTCAACAATGGCGGAACAATCTCAACTCCATAATCTCACCATCA-C 58
||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 287 GTTCTGAATCTCCCTTCAACAATGGCGGAACAATCTCAACTCAAGAATCTCACCATCATC 346
Query 59 CATCATCATCCTCTGCTTCTCCTTCCAATCACTATCCTCCGCCGCTGAATCTCACCTCAC 118
| || || |||||||||| ||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 347 C-TCCTCCTCCTCTGCTTATCCTTCCAATCACTATCCTTCGCCGCCGAATCTCACCTAAC 405
Query 119 CGTCGATTTCTACTCCAAATCTTGCCCTAATTTCCTCGACATTATTCGCGAAACCATCAC 178
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 406 CGTCGATTTCTACTCCAAATCATGCCCTAAATTCCTCGACATTATCCGCGAAACCATCAC 465
Query 179 CAACAAACAGATCTCAACTCCAACAACCGCCGCCGCAGCTCTCCGCCTCTTCTTCCACGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CAACAAACAGATCTCAACTCCAACAACCGCCGCCGCAGCTCTCCGCCTCTTCTTCCACGA 525
Query 239 CTGCTTCCCTAACGGCTGCGACGCCTCCGTCCTCGTTTCCTCAACCGCTTTCAACACCGC 298
||| ||||| ||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 526 CTGTTTCCCCAACGGCTGCGACGCCTCCGTCCTCGTTTCTTCCACCGCTTTCAACACCGC 585
Query 299 AGAACGCGATTCATCAATCAATCTCTCTCTTCCGGGCGACGGATTCGACGTCGTAATCCG 358
||||||||||||||||||||||||||||| || || |||||||||||||| ||||||||
Sbjct 586 CGAACGCGATTCATCAATCAATCTCTCTCTCCCCGGAGACGGATTCGACGTAGTAATCCG 645
Query 359 AGCTAAAACAGCTCTAGAACTCGCTTGTCCCAACACAGTCTCTTGCTCCGATATCATCGC 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AGCTAAAACAGCTCTCGAACTCGCTTGTCCCAACACAGTCTCTTGCTCCGATATCATCGC 705
Query 419 CGCCGCGGTACGTGATCTACTCGTCACCGTCGGTGGTCCTTACTACGAAATCTCCCTCGG 478
|| ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 706 CGTCGCGGTACGTGATCTCCTCGTAACCGTCGGTGGACCTTACTACGAAATCTCCCTCGG 765
Query 479 CCGTCGCGATTCTCGTGTCT-CGAAATCGTCTCTCGTCTCCGATCTCCTCCCACTTCCGT 537
|||||||||||| || || ||||||| ||||||||||||||||||||||| || ||||
Sbjct 766 CCGTCGCGATTCACGAA-CTTCGAAATCATCTCTCGTCTCCGATCTCCTCCCGCTCCCGT 824
Query 538 CGATGCAGATCTCGAAGCTCATCGATCAATTCAGCTCCAGAGGCTTCTCCGTTCAAGAAA 597
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 CGATGCAGATATCGAAGCTCATCGATCAATTCAGCTCCAGAGGCTTCTCCGTTCAAGAAA 884
Query 598 TGGTTGCTTTGAGCGGTGCTCACACCATCGGATTCTCACATTGCAAAGAGTTCACTAACC 657
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 885 TGGTTGCTTTGAGTGGTGCTCACACCATCGGATTCTCACATTGCAAGGAGTTCACGAACC 944
Query 658 GGGTCAACCCGAATAATAGTACCGGGTATAACCCGAGATTCGCGGTGGCTTTGAAGAAAG 717
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 945 GGGTCAACCCGAATAATAGTACCGGGTATAACCCGAGATTCGCGGTAGCTTTAAAGAAAG 1004
Query 718 CTTGTTTGAATTACAGAAATGACCCTACGATCTCTGTCTTCAACGACGTGATGACTCCAA 777
|||||| ||||| || ||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1005 CTTGTTCGAATTCCAAAAATGACCCTACGATATCTGTCTTCAACGACGTTATGACTCCGA 1064
Query 778 ACAAATTCGATAATATGTATTTCCAGAATATTCCGAAAGGTCTCGGGTTACTTGAATCGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ACAAATTCGATAATATGTATTTCCAGAATATTCCGAAAGGTCTCGGGTTACTTGAATCGG 1124
Query 838 ATCACGGGTTATTCTCCGACCCGAGAACCCGTCCGTTTGTTGAGTTATACGCGAGAGACC 897
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1125 ATCACGGTTTATTCTCCGACCCGAGAACCCGTCCGTTCGTTGAGTTATACGCGAGAGACC 1184
Query 898 AAGCTCGATTCTTTAAAGACTTCGCCGGAGCTATGCAGAAGTTGAGTCTTCACGGTGTTT 957
|| |||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1185 AATCTCGGTTCTTTAACGACTTTGCCGGAGCTATGCAGAAGTTGAGTCTTCACGGTGTTT 1244
Query 958 TGACCGGACGGCGAGGAGAGATCCGACGAAGGTGTGATGCTATCAACTAAAA 1009
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1245 TGACCGGACGGCGAGGAGAGATCCGACGAAGGTGTGATGCGATCAACTAAAA 1296
> AT3G28200.1 | Symbols: | Peroxidase superfamily protein | chr3:10518070-10519166
FORWARD LENGTH=1097
Length=1097
Score = 538 bits (291), Expect = 4e-152
Identities = 700/894 (78%), Gaps = 41/894 (5%)
Strand=Plus/Plus
Query 126 TTCTACTCCAAATCTTGCCCTAA-TTTCCTCGACATTATTCGCGAAACCATCACCAACAA 184
|||||||| ||| | ||||| || ||||||||||| || || || || ||||| |||||
Sbjct 85 TTCTACTCAAAAACATGCCC-AAGATTCCTCGACATCATCCGTGACACAATCACAAACAA 143
Query 185 ACAGATCTC-AACTCCAACAACCGCCGCCGCAGCTCTCCGCCTCTTCTTCCACGACTGCT 243
||| ||| | || ||| || ||||| ||||| | | |||| ||||||||||||||||| |
Sbjct 144 ACAAATCACTAA-TCCCACCACCGCAGCCGCCGTTATCCGTCTCTTCTTCCACGACTGTT 202
Query 244 TCCCTAACGGCTGCGACGCCTCCGTCCTCGTTTCCTCAACCGCTTTCAACACCGCAGAAC 303
||||||||||||||||||||||||||||| | ||||| ||||| ||||||||||||||||
Sbjct 203 TCCCTAACGGCTGCGACGCCTCCGTCCTCATCTCCTCCACCGCCTTCAACACCGCAGAAC 262
Query 304 GCGATTCATCAATCAATCTCTCTCTTCCGGGCGACGGATTCGACGTCGTAATCCGAGCTA 363
| || || || ||||| ||||| || || || ||||| ||||||||| | ||||||| |
Sbjct 263 GTGACTCTTCCATCAACCTCTCACTCCCCGGAGACGGTTTCGACGTCATTGTCCGAGCCA 322
Query 364 AAACAGCTCTAGAACTCGCTTGTCCCAACACAGTCTCTTGCTCCGATATCATCGCCGCCG 423
|||||||||| ||||||||||||||||||||||| |||||||| || |||||| ||| ||
Sbjct 323 AAACAGCTCTCGAACTCGCTTGTCCCAACACAGTTTCTTGCTCAGACATCATCTCCGTCG 382
Query 424 CGGTACGTGATCTACTCGTCACCGTCGGTGGTCCTTACTACGAAATCTCCCTCGGCCGTC 483
| ||||||||| || ||||||||||||||||||||||||| | | |||||||||||
Sbjct 383 CAACACGTGATCTTCTAATCACCGTCGGTGGTCCTTACTACGACGTTTTCCTCGGCCGTC 442
Query 484 GCGATTCTCGTGTC-TCGAAATCGTCTCTCGTCTCCGATCTCCTCCCACTTCCGTCGATG 542
| ||||| | | |||||||| ||||| | ||||||| || || ||||| || |
Sbjct 443 GTGATTCAAGAA-CGTCGAAATCTTCTCTTTTAACCGATCTTCTTCCTCTTCCTTCCACA 501
Query 543 C-AGATCTCGAAGCTCAT-CGATCAATTC-AGCTCCAGAGGCTTCTCCGTTCAAGAAATG 599
| | ||||| || |||| | | || || | || | ||| ||| | ||||||||||||
Sbjct 502 CCA-ATCTCTAAAATCATTCAA-CAGTTTGAA-TCAAAAGGTTTCACTGTTCAAGAAATG 558
Query 600 GTTGCT-TTGAGCGGTGCTCACACCATCGGATTCTCACATTGCAAAGAGTTCACTAAC-C 657
|||||| || || || || || | || || || |||||||| |||||||| | |
Sbjct 559 GTTGCTCTT-AGTGGAGCACATTCTATAGGGTTTTCACATTGTAAAGAGTTTG-TGGGTC 616
Query 658 GGGTCAACCCGAATAATAGTACCGGGTATAACCCGAGATTCGCGGTGGCTTTGAAGAAAG 717
|||| | |||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 617 GGGTGGGTCGGAATAATA---CCGGGTATAACCCGAGATTCGCAGTGGCTTTGAAGAAAG 673
Query 718 CTTGTT-TGAATTACAG-AAATGACCCTACGATCTCTGTCTTCAACGACGTGATGACTCC 775
||||| | |||||| ||| || || || |||||||| || || || | ||||||||
Sbjct 674 CTTGTGCT-AATTACCCTAAA-GATCCGACTATCTCTGTGTTTAATGATATTATGACTCC 731
Query 776 AAACAAATTCGATAATATGTATT-TCCAGAATATTCCGAAAGG-TCTCGGGTTACTTGAA 833
|| || || ||||||||||||| || ||||| || ||||| ||| ||||||||||||
Sbjct 732 TAATAAGTTTGATAATATGTATTATC-AGAATCTTAA-AAAGGGTCTTGGGTTACTTGAA 789
Query 834 TCGGATCACGGGTTAT-TCTCCGACCCGAGAACCCG-TCCGTTTGTTGAG-TTATACGCG 890
|||||||| || |||| | || ||||| |||||| | | |||||||| || || ||
Sbjct 790 TCGGATCATGGATTATAT-TCTGACCCTAGAACCAGATAT-TTTGTTGATCTT-TATGCT 846
Query 891 AGAGAC-CAAGCTC-GATTCTTT-AAAGACTTCGCCGGAGCTATGCAGAAGTTGAGTCTT 947
| ||| |||| || | || ||| ||||| || || ||||||||||||||||||||||
Sbjct 847 A-AGAATCAAGATCTG-TT-TTTCAAAGATTTTGCTAAAGCTATGCAGAAGTTGAGTCTT 903
Query 948 CACGGTGTTTTGACCGG-ACGGCGAGGAGAGATCCGACGAAGGTGTGATGCTAT 1000
||| | ||| || | | |||||||||||||| ||||||| ||||||||
Sbjct 904 TTTGGTATACAGACTGGTA-GAAGAGGAGAGATCCGAAGAAGGTGCGATGCTAT 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50334615294
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5