BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947766
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40140.1 | Symbols: | RING/U-box superfamily protein with A... 2577 0.0
> AT5G40140.1 | Symbols: | RING/U-box superfamily protein with
ARM repeat domain | chr5:16057347-16058999 FORWARD LENGTH=1653
Length=1653
Score = 2577 bits (1395), Expect = 0.0
Identities = 1569/1654 (95%), Gaps = 8/1654 (0%)
Strand=Plus/Plus
Query 21 ATGGAGATTCAACGACCAGTTATCAATCTCATGGTTCTTCACTCACAACACGATAAAAGT 80
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGAGATTCAACGACCAGTCATCAATCTCATGGTTCTTCACTCACAACACGACAAAAGT 60
Query 81 GACAACCTTTCCCGACGAGAATCTCTCGCCGGTAAATCCAAATGGAGAATCTCATTATCC 140
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 61 GACAACCTTTCCCGACGAGAATCTCTCGCCGGTAAATCCAAATGGAGAACCTCCTTATCC 120
Query 141 CGTTCTTCTTCATCTTCTTCATC--A-AACAATTCTCCGACCAAAACAGAGATTCCGGCA 197
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 121 CGTTCTTCTTCATCTTCTTCATCAAACAACAATTCTCCGACCAAAACAGAGATTCCGGCA 180
Query 198 GAGTTTCTCTGTCCGACCTCAGGTTCTTTAATGTCTGATCCAATCATCGTCTCTTCTGGT 257
|||||||||||||||| |||||||||||||||| |||| |||||||| |||||||| |||
Sbjct 181 GAGTTTCTCTGTCCGATCTCAGGTTCTTTAATGGCTGACCCAATCATAGTCTCTTCCGGT 240
Query 258 CACTCCTACGAAAGAGCTTGCGTCATAGCTTCTAAAACCCTAGGCTTTACACCAAATCCA 317
||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||
Sbjct 241 CACTCCTACGAAAGAGCTTGCGTCATAGCTTGTAAAACCCTAGGCTTTACTCCAACCCCA 300
Query 318 CCGCCGGATTTCTCCACCGTCATACCAAATCTCGCTTTAAAATCCGCAATTCTCAGTTGG 377
|| || |||||||||||||| ||||||||||||||||||||||||||||||| ||| |||
Sbjct 301 CCTCCAGATTTCTCCACCGTGATACCAAATCTCGCTTTAAAATCCGCAATTCACAGCTGG 360
Query 378 TGTGAACGACGGTGTTTTCCACCGCCAAAGCCACTCGATTCCGCCGCCGCGGAGAAGCTT 437
|||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 361 TGTGAACGGCGGTGTTTTCCACCGCCGAAGCCACTCAACTCCGCCGCCGCGGAGAAGCTT 420
Query 438 ATACTCACATTAATGGAGAAAACACCAC--A-AAGAAAAGTCTCAGTTTCAGAGAAGGAA 494
|||||| ||||||||||||||| ||||| | ||||||||| || ||||||||||| ||
Sbjct 421 ATACTCGCATTAATGGAGAAAAAACCACAAAGAAGAAAAGTATCTGTTTCAGAGAAAGAG 480
Query 495 CTTATCAAAGCAATTAGAGATAAACCATCAGTGAGACTTAACCACGCTGCGACGGAGCTT 554
|||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 CTTATCCAAGCTATTAGAGATAAACCATCAGTGAGACTTAACCACGCCGCGACGGAGCTT 540
Query 555 GACCGGAGACCTAACTACTTCAATTCAAGCTCCGACGAGTCAATAGCTTCTTCAAGCCGT 614
|| ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 541 GATCGGAGACCTAATTACTTCAACTCAAGCTCCGATGAGTCAATAGCTTCTTCAAGCCGT 600
Query 615 ACACTACAATTAACAACTAAACCTAGTTGCTTCTCTTCACCTTCATCTGGAGAAATCGAA 674
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACACTACAGTTAACAACTAAACCTAGTTGCTTCTCTTCACCTTCATCTGGAGAAATCGAA 660
Query 675 TCTTTAGAACCAAACCTAACTCCAGAAGAAGAAGCTTTACTAACAAAGCTAAAGAGTAAT 734
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 TCTTTAGAACCTAACCTAACTCCAGAAGAAGAAGCTTTACTAACAAAGCTAAAAAGTAAT 720
Query 735 CGAATCTCAGAGATTGAAGAAGCTTTGATTTCGATTCGACGCGTTACAAGAATCGATGAA 794
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 721 CGAATCTCAGAGATTGAAGAAGCTTTGATTTCGATTCGACGCATCACAAGAATCGATGAA 780
Query 795 AGTTCAAGAATTAGTTTATGTACAACGAGACTAATCTCTGCACTTAAGTCACTGATTGTT 854
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 781 AGTTCAAGAATCAGTTTATGTACAACGAGAGTAATCTCTGCACTTAAGTCACTGATTGTT 840
Query 855 TCAAGATACGTGACGGTTCAGGTTAATGTCACGGCGGTTCTTGTGAATTTGTCTTTGGAG 914
|| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 841 TCCAGATACGCGACGGTTCAGGTGAATGTCACGGCGGTTCTTGTGAACTTGTCTTTGGAA 900
Query 915 AAATCTAATAAAGTTAAGATCGTACGGTCAGGAATCGTTCCTCCGTTGATCGACGTTTTG 974
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AAATCTAATAAAGTCAAGATCGTACGGTCAGGAATCGTTCCTCCGTTGATCGACGTTTTG 960
Query 975 AAATGCGGTTCCGTTGAAGCGCAGGAACATTCCGCCGGAGTTATCTTCAGTTTAGCTCTT 1034
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 961 AAATGCGGTTCCGTCGAAGCTCAGGAGCATTCCGCCGGAGTTATCTTCAGTTTAGCTCTT 1020
Query 1035 GAAGATGAAAACAAGACGGCGATTGGTGTTCTCGGAGGTTTAGAGCCGTTGCTTCATTTG 1094
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GAAGATGAGAACAAAACGGCGATTGGTGTTCTCGGAGGTTTAGAGCCGTTGCTTCATTTG 1080
Query 1095 ATCCGAGTTGGTACTGAGTTGACTCGTCATGACTCGGCTTTAGCTTTGTATCATCTTTCG 1154
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 ATCCGAGTTGGTACTGAGTTAACTCGGCATGACTCGGCTTTAGCTTTGTATCATCTTTCT 1140
Query 1155 CTTGTACAGAGTAATAGAGGGAAGCTTGTTAAGCTTGGAGCTGTTCAGATGCTTTTGAAC 1214
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1141 CTTGTACAGAGTAATAGAGGGAAGCTAGTTAAGCTTGGAGCTGTTCAAATGCTTTTGGGT 1200
Query 1215 ATGGTGAAGTT-AGGACAGATGATTGGTCGTGTTTTGTTGATTCTTTGTAACATGGCTTC 1273
||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1201 ATGGTGA-GTTTAGGACAGATGATTGGTCGTGTTTTGTTGATTCTTTGTAATATGGCTTC 1259
Query 1274 GTGTCCGGTGAGTAGACCAGCTTTGCTTGACTCAGGTGGTGTTGAATGTATGGTTGGGGT 1333
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1260 GTGTCCGGTGAGTCGACCAGCTTTGCTTGACTCGGGTGGTGTTGAATGTATGGTTGGGGT 1319
Query 1334 TTTGAGAGGAGATAGAGAGGTTAATGAGTCGACTCGGGAGAGTTGTGTTGCGGTTTTGTA 1393
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1320 TTTGAGAAGAGATAGAGAGGTTAATGAGTCGACTCGGGAGAGCTGTGTTGCGGTTTTGTA 1379
Query 1394 TGGGTTGAGTCACGACGGTGGTTTGAGGTTTAAGGGGTTGGCTATGGCGGCGAATGCGGT 1453
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1380 TGGGTTGAGTCACGACGGTGGTTTGAGGTTTAAAGGGTTGGCTATGGCGGCGAATGCGGT 1439
Query 1454 GGAGGAGTTGGTGAAAGTGGAGAGGAGTGGAAGAGAAAGAGCTAAGCAGAAGGCGAGAAG 1513
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1440 GGAGGAGTTGGTGAAAGTGGAGAGGAGTGGGAGAGAAAGAGCTAAGCAGAAGGCGAGAAG 1499
Query 1514 AGTTTTGGAAGTGTTGAGAGCTAAAATGGAAGATGATGATTCGCCGGAGAATGAGGAGAT 1573
||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 1500 AGTTTTGGAAGTGTTGAGAGCTAAAATTGAAGATGATGATTTGGTGGAGAATGAGGAGAT 1559
Query 1574 TGATTGGGAAGTGTTGCTTAATTCAGGTGATGTTAGTCGGAGCCGGTATCGACTCGGTGG 1633
||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1560 TGATTGGGAGGAGTTGCTTAATTCCGGTGATGTTAGTCGGAGCCGGTGTCGACTCGGTGG 1619
Query 1634 TGAGAAATCGTGTGTTAACTCGGCCGAGTTTTGA 1667
||||||||| ||||||||||||||||||||||||
Sbjct 1620 TGAGAAATCTTGTGTTAACTCGGCCGAGTTTTGA 1653
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83383105245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5