BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947770
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
AT5G40050.1 | Symbols: | F-box/FBD-like domains containing pro... 279 2e-74
> AT5G40050.1 | Symbols: | F-box/FBD-like domains containing protein
| chr5:16032083-16033551 REVERSE LENGTH=1248
Length=1248
Score = 279 bits (151), Expect = 2e-74
Identities = 194/214 (91%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 447 GGTGGGAATGTGGTGAAAGTGCTTGAGATACAAGGA-TATAAAGGAAGACTTGGGGAACT 505
||||||||| ||||||| ||| ||||||||||| || |||||||||||||||| ||||||
Sbjct 1036 GGTGGGAATATGGTGAAGGTGGTTGAGATACAA-GAGTATAAAGGAAGACTTGAGGAACT 1094
Query 506 GAACCAAGTGAAGTTCTTCTTGTGGGGAATGGAGAATCTTGAAGAGATGAAAGTGAACAT 565
||||||||| || | ||||||| | | ||||||||||||||||||| ||||||||||||
Sbjct 1095 GAACCAAGTCAAATGCTTCTTGAGAGAAATGGAGAATCTTGAAGAGGTGAAAGTGAACAC 1154
Query 566 TAGTGATGAGATAGAGAACAAGTTGCAACTCACAAATGCTCTTCTTGCTCTTC--CC-AA 622
|||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1155 TAGTGATGAGATCGAGAACAAGTTGCAACTCACAAATGATCTTCTTGCTCTTCTTCCTAA 1214
Query 623 ACGTTCATCCAAATGCAACATCCATGTCTTGTGA 656
||| ||||||||||||||||||||||||||||||
Sbjct 1215 ACGCTCATCCAAATGCAACATCCATGTCTTGTGA 1248
Score = 231 bits (125), Expect = 5e-60
Identities = 293/371 (79%), Gaps = 23/371 (6%)
Strand=Plus/Plus
Query 45 GAAGAATTATACATACATCACATTTACACTGACGATAGAGAATTC-GAATTCGAAGACAT 103
|||||||||||||||||||||||||||| ||| |||||||| | |||||| || |||
Sbjct 538 GAAGAATTATACATACATCACATTTACATTGAAGATAGAGA-TGAAGAATTC-AA--CAT 593
Query 104 TCCTCCAACACCTTACTATTTATACCACGACAACATCAAGAAACTCACAATTCGCTACA- 162
|| | || ||||| | ||| || || | ||||||| |||||||||||| || ||||||
Sbjct 594 TCATACAGCACCTCATTATATAG-CC-C-ACAACATAAAGAAACTCACAGTTTGCTACAA 650
Query 163 TCGACGATG---AGTCTTATCGGAATTTGAAAATCTACACACCCAATCTTGTCTACCTCG 219
| |||||| || || ||| | |||| |||||||||||| |||||||| ||||| |
Sbjct 651 TA-ACGATGTTCAGGCTCCTCGCATTTTGTCAATCTACACACCAAATCTTGTTTACCTAG 709
Query 220 ACTACTCTGATTCTATAACTTGTG-AGTTTGAAT-CAGAAAATTGCTTAAATG-TCCTTT 276
|||||||||||| | |||||||| | | | ||| | || ||| ||| |||| || |||
Sbjct 710 ACTACTCTGATTATCTAACTTGTTTA-TAT-AATTCGGAGAATCACTTCAATGATC-TTT 766
Query 277 TAGAAGCCCGCCTCAATCTTGTTTTCGGATGGAGATGG-AGATTGAGCAATGAACACATA 335
||||||||||||| |||||| ||||| | || | ||| |||| | | |||||||| |
Sbjct 767 TAGAAGCCCGCCTTGATCTTGCTTTCGCAAGG-GCTGGGAGATGGGGTGATGAACACG-A 824
Query 336 AAC-TGTTCCAAAATCATGGATTCTATCTGCAATGTTCGAATCCTTTACCTCTCTTCTTC 394
|| |||| ||||||||| |||||||| |||||||| ||||||| ||||||||| ||
Sbjct 825 CACCTGTTTAAAAATCATGAATTCTATCACCAATGTTCAAATCCTTCACCTCTCTTGTTT 884
Query 395 TACTGTTGAGA 405
|||||||||||
Sbjct 885 TACTGTTGAGA 895
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32752663844
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5