BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947784
Length=3549
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and ... 2769 0.0
AT3G23145.1 | Symbols: | zinc ion binding;isoleucine-tRNA liga... 211 3e-53
> AT4G10320.1 | Symbols: | tRNA synthetase class I (I, L, M and
V) family protein | chr4:6397330-6404596 REVERSE LENGTH=3856
Length=3856
Score = 2769 bits (1499), Expect = 0.0
Identities = 2138/2440 (88%), Gaps = 70/2440 (3%)
Strand=Plus/Plus
Query 832 TGATACCAAGAAATCAAATCCTAAACCCAAAGGTG------GTGATAGTGCAGCTGATTC 885
|||||| |||||| ||||||||||| | ||||||| ||| ||||||||||||||
Sbjct 936 TGATACTAAGAAAGCAAATCCTAAAGCTAAAGGTGCTAAACCTGAGAGTGCAGCTGATTC 995
Query 886 TTATCAAGTTTTGGAGAAATTTGATGGAGCTTCCCTGGTTGGGAAGAAGTATGAACCTTT 945
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 996 TTATGAAGTTTTGGAGAAATTTAATGGAGCTTCCCTGGTTGGGAAGAAGTATGAACCTTT 1055
Query 946 GTTTGACTACTTTAGTGATTTCTCATGTGTGGCCTTTCGAGTAGTAGCAGATGATTATGT 1005
|||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1056 GTTTGATTACTTTAGTGATTTCTCAAGTGAGGCCTTTCGAGTAGTAGCAGATGATTATGT 1115
Query 1006 CACTGATGACAGTGGTACTGGCATCGTCCACTGTGCTCCTGCCTTTGGTGAAGACGATTA 1065
||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1116 CACTGATGACAGTGGTACTGGTATTGTCCACTGTGCTCCTGCCTTTGGTGAAGATGATTA 1175
Query 1066 CCGTGTTTGTCTTGAGAACAAGATCGTTGAACAGGGTGAAAATCTAGTTGTGGCTGTTGA 1125
|||||||||||| |||||| || | || |||| || ||||||||||| ||||||||
Sbjct 1176 TCGTGTTTGTCTTTTGAACAAAATAATCAAAAAGGGGGAGAATCTAGTTGTTGCTGTTGA 1235
Query 1126 TGAGGATGGGCTT-TTTACTGAGAGAATTACCCATTTCTTTGGCCGGTATGTCAAAGATG 1184
||| |||||| || |||||||||||||||||||| ||| |||||| |||||||||||||
Sbjct 1236 TGATGATGGG-TTGTTTACTGAGAGAATTACCCACTTCAGTGGCCGTTATGTCAAAGATG 1294
Query 1185 CCGACAAGGATATAATTGAAGCTGTGAAGACCAAAGGCAGACTTGTCAAAACTGGGA-GC 1243
| |||||||||||||||||||| || ||| |||| ||||| ||||| ||||| |||| ||
Sbjct 1295 CAGACAAGGATATAATTGAAGCCGTTAAGGCCAAGGGCAGGCTTGTTAAAAC-GGGAAGC 1353
Query 1244 TTTACTCACTCATATCCGTTTTGCTATCGATCAGACACTCCTCTCATATATAGAGCCCTT 1303
|||||||||||||| || ||||||| ||||||||||| || |||||||||||||| ||
Sbjct 1354 TTTACTCACTCATACCCATTTTGCTGGCGATCAGACACCCCACTCATATATAGAGCAGTT 1413
Query 1304 CCCTGTTGGTTTGTCCGGGTGGAGGACCAGTTGAAGGAACAGTTGTTAGAAAA-CAATGA 1362
|| |||||||||| || |||||| | ||||||| ||| |||||||| |||| ||||||
Sbjct 1414 CCAAGTTGGTTTGTGCGTGTGGAG--C-AGTTGAAAGAAAAGTTGTTA-AAAAGCAATGA 1469
Query 1363 ACAGACATACTGGGTACCTGATCATGTGAAGGATAAACGCTTTCACAATTGGCTTGAAAA 1422
||||||| | |||||||||| | |||||||||||||||| |||||||||||||| |||||
Sbjct 1470 ACAGACAGAATGGGTACCTGGTTATGTGAAGGATAAACGTTTTCACAATTGGCTCGAAAA 1529
Query 1423 TGCAAGGGATTGGTGCATT-AGCCGAAGTAGATTTTGGGGCACGCCTCTACCAATATGGA 1481
||||||||||||| ||| | ||||||||||||||||||||||||||||| || |||||||
Sbjct 1530 TGCAAGGGATTGG-GCAATCAGCCGAAGTAGATTTTGGGGCACGCCTCTTCCGATATGGA 1588
Query 1482 TCAGTGATGATGGTGAGGAAGTTGTTG-TCATGGATTCTGTCGAGAAGCTTGAAAAGCTC 1540
| ||||||||||| ||||||||||| | |||||||||| || ||||||||||||||||||
Sbjct 1589 TAAGTGATGATGGGGAGGAAGTTGT-GATCATGGATTCCGTAGAGAAGCTTGAAAAGCTC 1647
Query 1541 TCTGGTGTCAAGGTCTTTGATCTACATCGTCACCATATTGATCAAATTACAATCCCATCT 1600
|||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||||
Sbjct 1648 TCTGGTGTTAAGGTCTTTGACCTGCATCGTCACCATATTGATCATATTACAATTCCATCT 1707
Query 1601 AGTCGTGG-GCCTGAGTTTGGTGTGCTCCGTCGTGTAGAAGACGTTTTTGATTGTTGGTT 1659
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1708 AGTCGTGGCGA-TGAGTTTGGTGTGCTCCGTCGTGTAGAAGATGTTTTTGATTGTTGGTT 1766
Query 1660 TGAGAGTGGGTCAATGCCTTATGCGTACATCCATTATCCTTTTGAAAACAAGGAGCTT-T 1718
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| || |
Sbjct 1767 TGAGAGTGGGTCAATGCCTTACGCGTATATCCATTATCCGTTTGAAAACAAGGAG-TTAT 1825
Query 1719 TTGAGA-GTAACTTCCCTGGTCATTTTGTGGCTGAAGGGCTTGATCAAACTCGTGGATGG 1777
|||||| | ||||| |||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 1826 TTGAGAAG-AACTTTCCTGGTGATTTTGTGGCTGAAGGTCTTGATCAGACTCGTGGATGG 1884
Query 1778 TTTTATACTCTTATGGTGCTGTCGACTGCATTATTTGGAAAGCCAGCATTTCGAAATCTG 1837
|||||||||||||||||| |||| ||||||||||||| ||| ||||| ||| |||||||
Sbjct 1885 TTTTATACTCTTATGGTGTTGTCTACTGCATTATTTGAAAAACCAGCGTTTAAAAATCTG 1944
Query 1838 ATTTGCAATGGTCTTGTGCTTGCTGAGGATGGAAAAAAGATGAG-TAAGAGTTTA-GATA 1895
||||||||||||||||| |||||||||||||| ||||||||| | ||||| ||| | |
Sbjct 1945 ATTTGCAATGGTCTTGTACTTGCTGAGGATGGGAAAAAGATG-GCTAAGAAATTACGG-A 2002
Query 1896 ATTATCCGCCTCCTCTGGAAGTCATAGATGAGTACGGAGCTGATGCTGTGCGATTGTACC 1955
||||||| || ||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 2003 ATTATCCACCACCTTTGGAAGTCATAGATGAGTATGGGGCTGATGCTGTGCGATTGTACC 2062
Query 1956 TCATCAATTCTCCGATCGTACGCGCCGAGCCACTACGCTTCAGAAAGGAAGGAGTACTTG 2015
| || ||||||||| | ||||| || |||||||||||||||| ||| ||||||||||| |
Sbjct 2063 TGATAAATTCTCCGGTTGTACGTGCTGAGCCACTACGCTTCAAAAAAGAAGGAGTACTCG 2122
Query 2016 GTGTTGTCAAAGATGTATTTCTTCCATGGTACAATGCATA-CAGATTCCTTGTTCAGAAT 2074
||||||||||||||||||| |||||||||||||||||||| | | ||||| |||||||||
Sbjct 2123 GTGTTGTCAAAGATGTATTCCTTCCATGGTACAATGCATATCGG-TTCCTCGTTCAGAAT 2181
Query 2075 GCAAAGAGACTTGAGATTGA-GGTT-TCTGGACCATTTGTTCCTACTGATCTAGCTACTT 2132
|||||||||||||||| ||| ||| | || || ||||||||||||||||| || |||
Sbjct 2182 GCAAAGAGACTTGAGACTGAAGGTGGTGTGC-CC-TTTGTTCCTACTGATCTGGCAACTA 2239
Query 2133 TACGGTCATCAAACGTTCTCGATCAGTGGATTTACTCAGCTACCCAGAGTCTTGTTTGTT 2192
||| |||| ||||| |||| |||||||||||| |||||||||| |||||||||||| |||
Sbjct 2240 TACAGTCAGCAAACATTCTTGATCAGTGGATTCACTCAGCTACGCAGAGTCTTGTTCGTT 2299
Query 2193 TTGTCCGTC-AGGAGATGGATGGTTACCGGCTTTATACTGTTGTTCCGTA-TCTTTTGAA 2250
||||||| | |||||||||||| || |||||||| ||||| ||||| | ||| |||||
Sbjct 2300 TTGTCCG-CGAGGAGATGGATGCCTATCGGCTTTACACTGTGGTTCC-TCGTCTCTTGAA 2357
Query 2251 GTTCCTCGACAATCTCACTAACATATATGTTAGATTCAACCGCAAGAGGTTAAAAGGCCG 2310
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2358 GTTCCTCGACAATCTCACTAACATATATGTCAGATTCAACCGCAAGAGATTAAAAGGCCG 2417
Query 2311 TACAGGAGAAGATGATTGTCACATTGCTCTTTCAACTCTATACAATGTGCTCCTCACTTC 2370
||| || |||||||||||||||| ||||||||| ||||||| |||||||||||| |||||
Sbjct 2418 TACGGGGGAAGATGATTGTCACACTGCTCTTTCGACTCTATTCAATGTGCTCCTTACTTC 2477
Query 2371 TTGCAAAGTGATGACCCCTTTTACACCTTTTTTCACTGAGACGCTATACCAGAATCTGCG 2430
||||||||||||| |||| ||||||||||| |||||||| || | ||||||||||||||
Sbjct 2478 TTGCAAAGTGATGGCCCCGTTTACACCTTTCTTCACTGAAACTTTGTACCAGAATCTGCG 2537
Query 2431 GAAAGCATGTGAAGGTTCAGAGGAAAGCATTCATTACTGCAGTTTTCCGGAGGAAGCTGA 2490
|||||| ||| ||||||| |||||||| |||| ||||||||| |||| | ||| ||
Sbjct 2538 GAAAGCGTGTAAAGGTTCTGAGGAAAGTGTTCACTACTGCAGTATTCC--ACCAAGG-GA 2594
Query 2491 AGGAACGAGA-GTGGAGAGGATTGAGCAAAGTGTTACAAGGATGATGACAATCATCGATC 2549
||||| | || | ||||||||||||| ||||||||| |||||||||| |||||| ||||
Sbjct 2595 AGGAATG-GAAGGGGAGAGGATTGAGTTAAGTGTTACGAGGATGATGAAAATCATTGATC 2653
Query 2550 TTGCTCGGAACATTCGTGAGCGTCACAAGCTACCCTTGAAAACTCCTCTAAAGGAAATCA 2609
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 2654 TTGCTCGGAACATTCGTGAGCGTAACAAACTACCCTTGAAAACTCCTCTAAAGGAAATGA 2713
Query 2610 CTGTAGTTCATCCAGATGCAGAATTCTTGGATGACATAACTGG-GAAACTAAAAGAGTAT 2668
|||||| ||||| ||||| || ||||| ||||||||||||| | | |||| |||||||
Sbjct 2714 TTGTAGTCCATCCCGATGCTGATTTCTTAAATGACATAACTGGAGTA-CTAAGAGAGTAT 2772
Query 2669 GTCTTGGAAGAACTTAATGTAAGATCTCTTGTGCCATGCAATGATACTCTCAAGTATGCG 2728
||||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 2773 GTCTTGGAAGAACTTAACGTGAGATCGCTTGTACCATGCAATGATACTCTGAAGTATGCA 2832
Query 2729 TCTCTAAAAGCAGAACCAGATTTCAGTGTATTGGGAAAACGTCTTGGAAAGTCAATGAGG 2788
|| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||
Sbjct 2833 TCACTAAAAGCAGAACCAGATTTCAGTGTATTGGGAAAGCGACTTGGAAAGTCGATGGGG 2892
Query 2789 CTTGTTGCAAAAGAAGTTAAAGAAATGTCTCAGCAAGATATCTTAAG-ATTTGAGGAGAC 2847
||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||| |
Sbjct 2893 CTTGTTGCAAAGGAAGTTAAAGAAATGTCTCAAAAAGATATCTTA-GCATTTGAGGAGGC 2951
Query 2848 CGGAAAAGTTACTATTGCTGGACACAC--GCTGGAGCTAACAGATATCAAGATTGTCAGG 2905
|| |||||||||||||| || ||| ||| || |||||||||||||||||| |||
Sbjct 2952 TGGGGAAGTTACTATTGCTA-AC-CACTTGCTAAAGGAAACAGATATCAAGATTGTTAGG 3009
Query 2906 GTTTTCAAACGCCCGGATGGTTTGAAAGATACGGAGATTGATGCTAA-TGGAGATGGTGA 2964
|||||||||||||| || | ||||||||| | ||||||||| | | ||||||||||||
Sbjct 3010 GTTTTCAAACGCCCAGACGATTTGAAAGAGAATGAGATTGATTC-AGCTGGAGATGGTGA 3068
Query 2965 TGTTTTGGTGATTCTGAATCTAC-AGCCAGATGATTCGTTG-TATGAAGCAGGTGTTGCT 3022
|||||||||||||||| |||||| ||| ||||||||| ||| | |||||||||| ||||
Sbjct 3069 TGTTTTGGTGATTCTGGATCTACGAGC-AGATGATTCTTTGGT-TGAAGCAGGTTTTGCC 3126
Query 3023 CGTGAGATTGTCAATAGGATCCAAAAACTACGGAAGAAGTCAGGTTTGGAACCAACAGAC 3082
||||||||||| || |||||||| |||||| |||| ||||||||| ||||||||||||||
Sbjct 3127 CGTGAGATTGTAAACAGGATCCAGAAACTAAGGAAAAAGTCAGGTCTGGAACCAACAGAC 3186
Query 3083 GTTGTGGAAGTGTACATTG-AATCATTGGACAAGGATGAATCTGCTTTGC-AA-CAAGTT 3139
|||||||||||||| || ||||||||||| |||||||||||| ||| | || ||||||
Sbjct 3187 TTTGTGGAAGTGTAC-TTCCAATCATTGGACGAGGATGAATCTG-TTT-CTAAACAAGTT 3243
Query 3140 CT-GTGCTCTCAGGAACAATACATTAAGGATACAATTGGTTC-ATCTTTGCTTCCGTCTA 3197
|| || ||||||||||||| |||| |||||| ||||||| || | |||| ||| |||||
Sbjct 3244 CTAGT-CTCTCAGGAACAAAACATCAAGGATTCAATTGGCTCCA-CTTTACTTTTGTCTA 3301
Query 3198 CGTTGA-TGCCATCTCATGCAGTGATACTATCTGACGAGA 3236
||| | ||||||| |||||||| ||| || | || ||||
Sbjct 3302 -GTTTAATGCCATCACATGCAGTCATAATAGCCGATGAGA 3340
Score = 749 bits (405), Expect = 0.0
Identities = 685/822 (83%), Gaps = 12/822 (1%)
Strand=Plus/Plus
Query 21 CCATGGAAGTAGTGGGAGAAGGGAAGGAGTTCTCTTTTCCTCGGGAGGAAG-AGAAAGTC 79
||||||||| ||| | ||||| || || ||||| || ||||| | |||| || | |||
Sbjct 86 CCATGGAAGAAGTATGCGAAGGAAAAGAATTCTCATTCCCTCGTCAAGAAGAAG-ATGTC 144
Query 80 CTCTCATTCTGGAATCAAATCGATGCCTTCAAGACGCAGCTCAAACGAACAGAGCATCTC 139
||||| ||||||| | |||||||||| |||||||| ||||||||||| || ||| ||||
Sbjct 145 CTCTCCTTCTGGACTGAAATCGATGCTTTCAAGACACAGCTCAAACGCACTGAGAATCTT 204
Query 140 CCCGAATACATTTTCTACGACGGGCCTCCTTTCGCCACCGGTCTTCCTCACTACGGCCAC 199
|| || ||||| ||||||||||| |||||||| |||||||| |||||||||||||| ||
Sbjct 205 CCTGAGTACATCTTCTACGACGGACCTCCTTTTGCCACCGGACTTCCTCACTACGGACAT 264
Query 200 ATCCTCGCCGGCACCATCAAGGACATCGTAACTCGCTACCAGACCATGACTGGTCACCAC 259
|||||||| || || || || || || || ||||| || ||||||||||||||||||||
Sbjct 265 ATCCTCGCTGGTACGATTAAAGATATTGTGACTCGGTATCAGACCATGACTGGTCACCAT 324
Query 260 GTCACGCGTCGCTTCGGGTGGGACTGTCACGGCCTCCCGGTTGAGCAACT--GATTGAAA 317
||||| ||||| || |||||||| ||||| ||| | || |||||| || | ||||||
Sbjct 325 GTCACTCGTCGGTTTGGGTGGGATTGTCATGGCTTACCTGTTGAG-AA-TGAGATTGATC 382
Query 318 AGAAGCTCG-GTATTGAGAGGAGAGCA-CAAGTGCTTCAGATGGGGATTGATAAGTATAA 375
||| | | |||| ||||||||| | |||| || ||||||| ||||||||||||||
Sbjct 383 GGAA-ATTGAATATTAAGAGGAGAG-ATGAAGTTATTAAGATGGGAATTGATAAGTATAA 440
Query 376 CGAAGAGTGTAGGAGTGTTGTGACTCGGTATGTGGAGGAGTGGGAGAAGGTGATTACTAG 435
||||||||||||||| |||||||||| ||||| | |||||||||||||| ||||||||
Sbjct 441 TGAAGAGTGTAGGAGTATTGTGACTCGTTATGTTGCTGAGTGGGAGAAGGTTATTACTAG 500
Query 436 AAGTGGTCGTTGGATTGATTTCAAGAACGACTATAAGACGATGGATCTGCCTTTTATGGA 495
||||||||||||||||||| ||||| || |||||||| |||||| |||||||||||||
Sbjct 501 GTGTGGTCGTTGGATTGATTTTAAGAATGATTATAAGACTATGGATTTGCCTTTTATGGA 560
Query 496 AAGTGTTTGGTGGGTTTTTGCTCAGCTTTTTGATAAGAATCTTGTCTACAAAGGCTTCAA 555
||||||||||||||||||| ||||||||| || ||||||||||| |||| ||| |||||
Sbjct 561 AAGTGTTTGGTGGGTTTTTTCTCAGCTTTGGGAGAAGAATCTTGTTTACAGAGGATTCAA 620
Query 556 GGTTATGCCTTATAGTACTGGTC-TCAAGACACAATTATCTAATTCAGAAGCTGGTTTGA 614
||||||||| || ||||||||| | ||||||| |||||||||| ||||||||| ||
Sbjct 621 GGTTATGCCGTACAGTACTGGTTGT-AAGACACCTTTATCTAATTTTGAAGCTGGTCAGA 679
Query 615 ACTACAAGGACGTTTCAGATCCTGAGATTATGGTGACGTTCCCAGTTATTGGCGATCAAG 674
|||| ||||| || | |||||||| || |||||||| || || |||||||| |||||||
Sbjct 680 ACTATAAGGAAGTCCCTGATCCTGAAATCATGGTGACTTTTCCGGTTATTGGGGATCAAG 739
Query 675 ATAATGCTGCTTTTGTGGCTTGGACTACTACTCCATGGACTCTTCCTAGCAATCTTGCTT 734
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 740 ATAATGCTGCTTTTGTGGCATGGACTACTACTCCGTGGACTCTTCCAAGCAATCTTGCTT 799
Query 735 TGTGTGTCAATCCCAATTTTGTTTATCTCAAGGTTCGTAACAAGCACAATGGGAGAGTCT 794
||||||| ||| | || ||||| ||| | ||||||||||||||| ||| ||| | ||| |
Sbjct 800 TGTGTGTAAATGCGAAGTTTGTCTATGTGAAGGTTCGTAACAAGAACACTGGAAAAGTGT 859
Query 795 ACGTGGTTGCTGAATCTCGCCTCTCAGCCCTTCCCGCTGATA 836
|| | |||||||||||||| | || || |||||| ||||||
Sbjct 860 ACATTGTTGCTGAATCTCGGTTGTCTGCTCTTCCCACTGATA 901
> AT3G23145.1 | Symbols: | zinc ion binding;isoleucine-tRNA ligases;ATP
binding;aminoacyl-tRNA ligases;nucleotide binding
| chr3:8252138-8253196 FORWARD LENGTH=477
Length=477
Score = 211 bits (114), Expect = 3e-53
Identities = 156/176 (89%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 916 TTCCCTGGTTGGGAAGAAGTATGAACCTTTGTTTGACTAC-TTTAGTGATTTCTCATGTG 974
|||| ||||||||||||||||||||||||||||||| ||| ||||| ||||||||| |||
Sbjct 164 TTCCTTGGTTGGGAAGAAGTATGAACCTTTGTTTGATTACTTTTAGCGATTTCTCAAGTG 223
Query 975 TGGCCTTTCGAGTAGTAGCAGATGATTATGTCACTGA-TGACAGTGGTACTGGCATCGTC 1033
|| | |||||| ||||||||||||||||||||| ||| ||| ||||||||||| || |||
Sbjct 224 TGACTTTTCGACTAGTAGCAGATGATTATGTCA-TGAATGATAGTGGTACTGGTATTGTC 282
Query 1034 CACTGTGCTCCTGCCTTTGGTGAAGACGATTACCGTGTTTGTCTTGAGAACAAGAT 1089
|| |||||||||| |||||||| ||| || || |||||||||||||||||| ||||
Sbjct 283 CATTGTGCTCCTGTCTTTGGTGCAGATGACTATCGTGTTTGTCTTGAGAACGAGAT 338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 176687973246
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5