BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947790
Length=2083
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3373 0.0
> AT5G39980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:16000712-16003072 REVERSE LENGTH=2361
Length=2361
Score = 3373 bits (1826), Expect = 0.0
Identities = 1986/2064 (96%), Gaps = 8/2064 (0%)
Strand=Plus/Plus
Query 21 ATGTATATAGACATTGCTTCATCTTCTTCTCTTTCTCTTCCATTTTTACCCTTAACCAGA 80
||||| ||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 ATGTACATAGAAATTGCTTCATCTTCTTCACTTTCTCTTCCATTATTACCCTTAACCAGA 60
Query 81 CCTCATATTTACACTTGC-ATACCCTTCTCCACCATTCCTGAAGCTAGACAACGCAATCT 139
|||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCATATCTACACTT-CGATACCCTTCTCCACCATTCCTGAAGCTAGACAACGCAATCT 119
Query 140 CATCTTCACAGTCTCTGCTTCTTCTTCATCAGCATCATCATCCACACAAACCAAAAAGGT 199
||||||||||||||||||||||||||| |||| | ||||||||||| |||||||||
Sbjct 120 CATCTTCACAGTCTCTGCTTCTTCTTCTTCAG----A--ATCCACACAAAACAAAAAGGT 173
Query 200 ATGGAGAAAACAACCGGAGAAGAACACAACGTCGTCGTTTCAGGCGTTAAGGAAACATCG 259
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 174 ATGGAGAAAACAACCGGAGAAGAACACTACGTCGTCGTTTCAGGCCTTAAGGAAACATCG 233
Query 260 GAGGTATCAAAGATCTGCTTTTCTCGATCATAACGTCGACATGGACGAGCTTCTAGCTTC 319
||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||||
Sbjct 234 GAGGTATCAAAGATCTGCTTTTCTCGACCACAACGTCGATATGGACGAGCTTTTAGCTTC 293
Query 320 AATTCATCAGACCCAGAACGAAAAAGAGCTTTTTTCTCTGCTTTCAACTTACAAAGACAG 379
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 294 AATTCACCAGACCCAGAACGAAAAAGAGCTTTTTTCTTTGCTTTCAACTTACAAAGACAG 353
Query 380 ACAATTGTCTATACGGTTCATGGTTTCTCTTCTTTCTCGAGAAAATGATTGGCAGAGATC 439
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 354 ACAATTATCTATACGGTTCATGGTCTCTCTTCTTTCTCGAGAAAATGATTGGCAGAGATC 413
Query 440 ATTAGCATTGCTCGATTGGGTTCATGAAGAAGCTAAATACACACCTTCTGTGTTCGCCTA 499
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 414 ATTGGCATTGCTCGATTGGGTTCATGAGGAAGCCAAATACACACCTTCTGTGTTCGCCTA 473
Query 500 CAATGTAGTTCTTCGAAATGTGTTGAGAGCTAAGCAATTTGGTATTGCACACGGACTGTT 559
|||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 474 CAATGTTGTTCTTCGAAATGTGTTGAGAGCTAAGCAGTTTGATATTGCACACGGACTGTT 533
Query 560 CGACGAAATGCGTCAGAGAGCTCTTGCGCCTGATAGGTATACTTATTCGACGCTAATTAC 619
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 534 CGACGAAATGCGTCAGAGAGCTCTTGCCCCTGATAGGTATACTTATTCAACGCTAATTAC 593
Query 620 TTCGTTTGGGAAAGAGGGTATGTTTGATTCGGCTTTGTCTTGTCTTCAAAAGATGGAGCA 679
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 594 CTCGTTTGGTAAAGAGGGTATGTTTGATTCTGCTTTGTCTTGGCTTCAAAAGATGGAACA 653
Query 680 AGACCGTGTTTCTGGTGACCTTGTTTTGTATAGCAACCTCATTGAGCTTTCTAGGAGGCT 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 AGACCGTGTTTCTGGTGACCTTGTTTTGTATAGCAACCTCATTGAGCTTTCTAGGAGGCT 713
Query 740 GTGTGATTACTCAAAGGCTATTTCGATTTTCTCGAGGTTGAAGAGGTCTGGTATTACGCC 799
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 714 GTGTGATTACTCTAAGGCTATCTCGATTTTCTCGAGGTTGAAGAGGTCTGGTATTACGCC 773
Query 800 TGATCTTGTTGCGTATAATTCGATGATTAATGTTTATGGGAAGGCCAAATTGTTCAAAGA 859
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| | |||
Sbjct 774 TGATCTTGTTGCGTATAATTCGATGATCAATGTTTATGGAAAGGCCAAATTGTTTAGAGA 833
Query 860 GGCGCGATTGCTTATAAAGGAGATGAATGAAGCTGGTGTCTTACCAAATACAGTTAGTTA 919
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 GGCGCGGTTGCTTATAAAGGAGATGAATGAAGCTGGTGTCTTACCAAATACAGTTAGTTA 893
Query 920 CTCCACTCTTTTGAGTGTGTATGTAGAGAATCAGAAGTTTTTAGAAGCTTTATCGGTTTT 979
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 894 CTCTACTCTTTTGAGTGTTTATGTAGAGAATCACAAGTTTTTAGAAGCTTTATCGGTTTT 953
Query 980 CGCGGAGATGAAAGAGGTGAATTGTCCGTTGGATCTCACGACTTGTAATATAATGATCGA 1039
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 954 CGCAGAGATGAAAGAGGTGAATTGTGCGTTGGATCTCACGACTTGTAATATAATGATTGA 1013
Query 1040 TGTTTATGGTCAGCTTGACATGGTTAAAGAAGCTGATAGGTTGTTTTGGAGTTTGAGGAA 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TGTTTATGGTCAGCTTGACATGGTTAAAGAAGCTGATAGGTTGTTTTGGAGTTTGAGGAA 1073
Query 1100 AATGGATATTGAACCTAATGTTGTTAGCTACAATACTATCCTTCGTGTTTACGGCGAGGC 1159
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1074 AATGGATATTGAACCTAATGTTGTTAGCTACAATACTATCCTTCGTGTTTACGGTGAGGC 1133
Query 1160 TGAGCTTTTCGGTGAAGCAATTCATCTTTTCAGGTTGATGCAGAGGAAAGACATTGAACA 1219
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGAGCTTTTCGGTGAAGCGATTCATCTTTTCAGGTTGATGCAGAGGAAAGACATTGAACA 1193
Query 1220 GAACGTTGTTACGTACAACACGATGATTAAGATCTATGGGAAAACTATGGAGCACGAAAA 1279
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GAACGTTGTTACTTACAATACGATGATTAAGATCTATGGGAAAACTATGGAGCACGAAAA 1253
Query 1280 GGCCACGAATCTTGTTCAAGAGATGCAGAGCCGAGGAATTGAACCTAACGCCATTACCTA 1339
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1254 GGCCACGAATCTTGTTCAAGAGATGCAGAGCCGAGGAATTGAACCTAATGCCATTACCTA 1313
Query 1340 CTCAACTATTATATCAATATGGGGGAAAGCTGGGAAATTGGACCGAGCTGCGACACTGTT 1399
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1314 CTCAACTATTATATCAATATGGGGAAAAGCTGGGAAATTGGACCGAGCTGCGACACTGTT 1373
Query 1400 TCAGAAGCTTAGGAGCTCGGGTGTGGAAATCGATCAAGTCCTGTATCAAACCATGATTGT 1459
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1374 TCAGAAGCTGAGGAGCTCTGGTGTGGAAATCGATCAAGTTCTGTATCAAACCATGATTGT 1433
Query 1460 GGCATATGAAAGAGTTGGTCTAATGGGTCATGCTAAACGTCTGCTTCATGAGTTAAAGCT 1519
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1434 GGCTTATGAAAGAGTTGGTCTAATGGGTCATGCTAAACGTCTGCTTCACGAGTTAAAGCT 1493
Query 1520 CCCGGATAATATCCCTCGGGAAACCGCTATCACCATTCTGGCTAAAGCCGGGAGAACTGA 1579
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1494 CCCGGATAATATTCCTCGGGAAACCGCTATCACCATTCTGGCTAAAGCTGGGAGAACGGA 1553
Query 1580 AGAGGCGACATGGGTTTTTCGTCAAGCTTTTGAATCCGGAGAGGTAAAAGACATATCAGT 1639
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1554 AGAGGCGACATGGGTTTTTCGTCAAGCCTTTGAATCCGGGGAGGTAAAAGACATATCAGT 1613
Query 1640 ATTTGGCTGTATGATCAATCTTTACTCAAGAAACCAAAGGTACGTAAATGTCATCGAAGT 1699
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1614 ATTTGGCTGTATGATCAATCTTTACTCAAGAAACCAAAGATACGTAAATGTCATCGAAGT 1673
Query 1700 GTTTGAGAAAATGAGAACCGCTGGTTACTTTCCGGATTCGAATGCGATAGCTATGGTGTT 1759
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1674 GTTTGAGAAAATGAGAACCGCTGGTTACTTTCCGGATTCGAATGTGATAGCTATGGTGTT 1733
Query 1760 GAACGCGTATGGGAAACAAAGAGAGTTTGAAAAAGCAGATACGGTTTACAGAGAAATGCA 1819
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1734 GAACGCGTACGGGAAACAAAGAGAGTTTGAAAAAGCAGACACGGTTTACAGAGAAATGCA 1793
Query 1820 AGAGGAAGGATGTGTTTTCCCTGATGAAGTTCATTTCCAAATGCTGAGTTTATACTCATC 1879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 AGAGGAAGGATGTGTTTTCCCTGATGAAGTTCATTTCCAAATGCTGAGTTTATACTCATC 1853
Query 1880 GAAGAAAGATTTTGAGATGGTTGAATCGTTGTTTGAGAGATTGGAATCTGATCCTAATGT 1939
|||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 1854 GAAGAAAGATTTTGAGATGGTTGAGTCGTTGTTTCAGAGATTAGAATCTGATCCTAATGT 1913
Query 1940 CAATAGCAAGGAGTTGCATTTGGTTGTGGCGGCTTTGTATGAGAGAGCAGATAAACTAAA 1999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1914 CAATAGCAAGGAGTTGCATTTGGTTGTGGCGGCTTTGTATGAGAGAGCAGATAAACTAAA 1973
Query 2000 CGATGCTTCAAGAGTCATGAATCGAATGAGAGAACGAGGAATCTTAAAGCCGTTTTCTGG 2059
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 1974 CGATGCTTCAAGAGTCATGAATCGGATGAGAGAACGAGGAATCTTAAAGCCATTTCCTGG 2033
Query 2060 ATGAATAATGTCATATAATTCTTC 2083
|||||||||||||||||||||||
Sbjct 2034 TTGAATAATGTCATATAATTCTTC 2057
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103262521065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5