BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947791
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53380.1 | Symbols: | O-acyltransferase (WSD1-like) family ... 270 2e-71
> AT5G53380.1 | Symbols: | O-acyltransferase (WSD1-like) family
protein | chr5:21654601-21656539 FORWARD LENGTH=1452
Length=1452
Score = 270 bits (146), Expect = 2e-71
Identities = 624/839 (74%), Gaps = 95/839 (11%)
Strand=Plus/Plus
Query 56 AGCCCTATGGCTC-GTGTGTTCCAATCGCCGGGCA-ACAACTGTTGCATCATCACCATGA 113
||||| ||||||| || | ||||| || ||||| | | || |||||| ||||| ||||
Sbjct 34 AGCCCGATGGCTCGGT-TATTCCAGTCACCGGGGATAGAA-AATTGCATTATCACGATGA 91
Query 114 TCGGTTGCAAAACCAAGATCAATGCTGATGTCATTCTACG-TGCCTTGAAGCTTAATGTT 172
| |||| |||| ||||||| ||| |||| |||||||| | || |||||||| ||| |||
Sbjct 92 TTGGTTTCAAAGCCAAGATTAATCCTGACATCATTCTA-GATGACTTGAAGCATAACGTT 150
Query 173 TCCAAGCATCCTCGTTTCTCTAG--CA-----AATTG-------T-C---TGATGATGGT 214
||||||||||||||||||| ||| | ||||| | | | ||||||||
Sbjct 151 TCCAAGCATCCTCGTTTCTGTAGTAAATTGGTAATTGCCACACATACAAATTATGATGGT 210
Query 215 GCA-TGTTGGATTAAGACTC-AAGTCAATGTAGAAAACCATGTATTTGTACCAGATATAG 272
| | | ||||| ||||| | |||||||||||||| ||||||||||||||||||| ||||
Sbjct 211 G-AGAGATGGATGAAGAC-CAAAGTCAATGTAGAAGACCATGTATTTGTACCAGACATAG 268
Query 273 ACC-AGAACAAGA-TCGGAGAAGATGGAGAAGG-TTATGTTGAAGACTATGTTTCACGTC 329
||| | || ||| | | |||||||||| || || || || |||||||| || ||||
Sbjct 269 ACCTACAA-GAGATTAACA-AAGATGGAGATGGCTT-CGTCGATGACTATGTCTCGCGTC 325
Query 330 TTACGA-TGCTTCCTCTCGATAAATC-AAGACCTTTGTGGGACATGCACATCCTCAACAT 387
| || | || ||||||||||||||| || ||| |||||||| || || |||||||| |
Sbjct 326 TAAC-ATTGAGTCCTCTCGATAAATCGAA-ACCATTGTGGGATATTCATATCCTCAATGT 383
Query 388 CAAAACGAT-TGATGCCGAAGCGGTTTGTGTAATAAGATCTCACCATTCATTGGGAGATG 446
|||||| || |||||| |||||||| ||||||| |||| ||| ||||| |||| |||||
Sbjct 384 CAAAAC-ATCTGATGCAGAAGCGGTCGGTGTAATGAGATGTCATCATTCTTTGGCAGATG 442
Query 447 GAACAT-CTCTCATGTCTCTTC-TAATAGCTTGTACTCAG-AAAACATCACA-C-CGAGA 501
||| | || | ||||| | || | | || ||||| | | ||||||||| | | |||
Sbjct 443 GAATGTCCT-TGATGTCAC-TCTTGGTGGCATGTAC-CCGAAAAACATCAAATCTTGAGT 499
Query 502 CATATTTCCTACTAGTCATGTAC-TTAAACAGCGT--A-AAA-G--G--G-A--G-GAT- 547
| ||||||||| | || || | | |||| |||| | ||| | | | | | |
Sbjct 500 C--ATTTCCTACCATTCCTG-CCATAAAACGGCGTGAACAAATGATGTCGCATCGCTTTG 556
Query 548 AAAGATAAAGTCCCATGGTTCTT-AAGATGGGTACTTGCGGTTT-TT-TCGTTAGTGAGA 604
|| | |||| | ||| | || ||||| | || || |||| || | | ||||||
Sbjct 557 GAA-ACAAAG--GC-TGG-TATTCAAGATCGATAAACGCAGTTTATTAT-G-CCGTGAGA 609
Query 605 TTGATTTGCAATAC-TTTCGTGGATAGTT-TGCTTCTCTTGGG-GAC-A-ACTTTGTTCT 659
|| ||||| ||||| || |||||| || | || || ||||| ||| | |||| || |
Sbjct 610 TTAATTTGGAATACAATT-GTGGAT-CTTCTACTGCT-TTGGGCGACTAGTCTTT-TT-T 664
Query 660 TGAAGGATACAAAGACGCCT-CT-G-AAAGGTGATGTGGGTGTAGAGAATAAT-CAGAAG 715
| ||||||||| |||||||| | | | ||| || ||| | | ||||||| || | |
Sbjct 665 TTAAGGATACAGAGACGCCTATTAGCGAGGGT-AT-TGGAT-CCGGGAATAATGCA-AGG 720
Query 716 AGATTTTGTCACCGGATTGTTTCGTTAGATGACATAAAACTTATAAAGGAA-GTTATGAA 774
||||||| |||||| | || || || ||||| || ||||| ||||| || | ||||||
Sbjct 721 AGATTTTATCACCGAACCGTCTCATTGGATGATATTAAACTGATAAA-AAATGCTATGAA 779
Query 775 CATGACTATCAATGATGTTCTACTTGGAGTTACACAAGCCGCTCTCTCGCGCTATCTTA 833
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 780 GATGACTATCAATGATGTTCTACTTGGAGTTACACAAGACGCTCTCTCCCGCTATCTTA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71284773900
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5