BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947792
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
AT5G10730.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 316 6e-86
> AT5G10730.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:3390614-3393178 REVERSE LENGTH=1303
Length=1303
Score = 316 bits (171), Expect = 6e-86
Identities = 198/211 (94%), Gaps = 1/211 (0%)
Strand=Plus/Plus
Query 103 GGTTTGTTTTCTGTCTCTGGTGGCGGGAGGTATCTGTCGACAGACTCTAACAAAATTGAT 162
|||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 287 GGTTTG-TTTCTGCCTCTGGTGGCGGGAGGTATCTCTCGACAGACTCTAACAAAATTGAT 345
Query 163 GAGCCCTTCAATGTGGAAGAAGTTGATTCTGTACATGTGCCTCCAACTCCAACTGAGAAG 222
|||||||||||||||||||||| ||| ||||||||||||||||| |||| |||||||||
Sbjct 346 GAGCCCTTCAATGTGGAAGAAGCTGAGACTGTACATGTGCCTCCACCTCCTACTGAGAAG 405
Query 223 CTGCTTGTCCGGGGTGGAAATGGTTTTGTGGGATCACATATATGTAAAGAAGCTTTAGAT 282
|||||||||| ||| |||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 406 CTGCTTGTCCTGGGAGGAAATGGTTTTGTGGGATCACATGTCTGTAAAGAAGCTTTAGAT 465
Query 283 CGCGGCTTATCGGTCTCTAGCCTTAGCAGGT 313
||||||||||| |||||||||||||||||||
Sbjct 466 CGCGGCTTATCTGTCTCTAGCCTTAGCAGGT 496
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15683537688
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5