BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947800
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39940.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase fam... 2298 0.0
> AT5G39940.1 | Symbols: | FAD/NAD(P)-binding oxidoreductase family
protein | chr5:15987553-15990701 FORWARD LENGTH=1679
Length=1679
Score = 2298 bits (1244), Expect = 0.0
Identities = 1408/1487 (95%), Gaps = 12/1487 (1%)
Strand=Plus/Plus
Query 7 AATTTTGAGTGAGTAATGAACTTGAATTTGGCAAGTCCTTTATGGGTTCCTGTAAAAGCT 66
||||||||||| ||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 82 AATTTTGAGTGTGTAATGAGCTTGAATTTGGCAAATCCTGTATGGGTTCCTGTAAAAGCT 141
Query 67 TTGTTATGTAGGACAATCACGAGAAGGAGAAATTTCACTTCCACTGCTATAACTCGTTTA 126
||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||| |||||
Sbjct 142 TTGTTATGTAGAACAATCAGGAGAAGGAGAATTTTCACTGCCACTGCTATAACTAGTTTA 201
Query 127 GCCGAAAAGGGGGAAAAGGATGAGAGTGAGCTTTTGGTTGTTGTTGGTGGTGGAGCAGCT 186
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 GCCGACAAGGGGGAAAAGGATGAGAGTGAGCTTTTGGTTGTTGTTGGTGGTGGAGCAGCT 261
Query 187 GGAGTTTATGGAGCTATTAGGGCTAAAACTCT-TGCACCTGATTTGAGAGTTTTAGTTAT 245
|||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||||
Sbjct 262 GGAGTTTATGGAGCAATTAGGGCTAAAACTCTCT-CACCTGATTTGAGAGTTTTGGTTAT 320
Query 246 TGAAAAAGGGAGATTTCTTTCTAAGGTGAAGATTTCTGGTGGTGGTCGATGCAATGTGAC 305
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 321 TGAAAAAGGGAGTTTTCTTTCTAAGGTGAAGATTTCCGGTGGTGGTCGATGTAATGTGAC 380
Query 306 AAATGGGCATTGCAATGATACTATTAATTTGGCAGGGCATTATCCTCGTGGTCATAAAGA 365
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 381 AAATGGGCATTGCAATGATACTATTAATTTGGCTGGGCATTATCCTCGTGGTCATAAAGA 440
Query 366 GCTTAAAGGTTCTTTCTTTTATACACATGGACCTGCTGATACTACGTCATGGTTTTCTGA 425
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 441 GCTTAAAGGTTCTTTCTTTTACACACATGGACCTGCTGATACTATGTCATGGTTTTCTGA 500
Query 426 TCATGGAGTACCACTAAAGGTTGAAGACGATGGAAGAGTATTCCCTGTCAGTGATTGTTC 485
|||||||| ||||||||| |||||| |||||||||||||||||||| |||||| |||
Sbjct 501 GCATGGAGTGCCACTAAAGACTGAAGATGATGGAAGAGTATTCCCTGTTAGTGATAATTC 560
Query 486 ATCT-TCTGTAATTGATTGTCTCTTAAATGAAGCAAACATTCGAGGAGTCAGGCTTGAGA 544
|| | |||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 561 AT-TATCTGTAGTTGATTGTCTCTTAAATGAAGCAAACATTAGAGGAGTTAGGCTTGAGA 619
Query 545 GAGGAAAGTCTGTGTTAGCTGCTTCTACTAAACCCGATGGAAAGTTCCTTGTTAAAGTTG 604
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 620 GAGGAAAGTCTGTGTTAGCTGCTTCTATTAAACCCGATGGAAAGTTCCTTGTTAAAGTTG 679
Query 605 GGAAACAAAGTGCTGACGTGTCTGAATCTGTCGAAGCTACATATCTTCTGATTGCAACTG 664
|||| |||||||||||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct 680 GGAAGCAAAGTGCTGACACGTCTGAATCTATAGAAGCTACATATCTTCTGATTGCAACTG 739
Query 665 GAAGTAGCCAACAGGGTCACTCTTTAGCCACTAAATTTGGTCATTCCATTGTAGATCCAG 724
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 GAAGTAGCCAAAAGGGTCACTCTTTAGCCACTAAATTTGGTCATTCCATTGTAGATCCAG 799
Query 725 TACCGAGCTTATTCACTTTTAAGATCAATGATCCATTGCTGACTGCGTTAGCAGGGATTA 784
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 800 TACCGAGCTTATTCACTTTTAAGATCAATGATCCATTGCTGACCGAGTTAGCAGGGATTA 859
Query 785 GTTTCTCGAAAGTCCAAGCCAAATTGAAATTAGATAATCCAT-CCCAGGATTTTTCTAAC 843
||||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||||
Sbjct 860 GTTTCTCGAAAGTCCAAGCCAAACTGAAATTAGATAATCCATGCCC-GGATTTGTCTAAC 918
Query 844 CTCGTGCAGATTGGTCCAATGCTTGTAACACATCGGGGACTTAGTGGACCGGTTATTCTT 903
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 919 CTCGTGCAGATTGGTCCTATGCTTGTAACACATTGGGGACTTAGTGGACCGGTTATTCTT 978
Query 904 CGACTCTCTGCATGGGGTGCACGGCATCTCTTCAGTTCTAAGTACAAAGGGCATCTTATT 963
|||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||
Sbjct 979 CGACTCTCTGCATGGGGTGCACGGTACCTCTTTAGTTCTAAGTACAAAGGGCATCTTATT 1038
Query 964 GTTGACTTCATACCGGATATTAACATCGAAACTGCTAAATCTGTACTCAAAGAACACAAG 1023
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 GTCGACTTCATACCGGATATTAACATCGAAACTGCTAAATCTGTACTCAAAGAACACAAG 1098
Query 1024 CTGCAGTTTTCAAAGCACAAAGTATCCAACTCCTTTCCTCCTCAATTTGGTCTTGTCAAT 1083
||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||
Sbjct 1099 CTGCAGTTTTCAAAGCACAAAGTGTCCAATTCCTATCCTCCTCAATTTGGTCTTGTCAAT 1158
Query 1084 AGATTCTGGAGATACATTCTAGACCGCGAGGGTTCTTCAAAAGACACCTTATGGGCTTCA 1143
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1159 AGATTCTGGAGATACATTCTAGACCGCGAGGGTTCTTCAAAGGACACCTTATGGGCTTCA 1218
Query 1144 CTGTCAAATAACTCATTGAGCTCTATTTCTGATCTTCTTACACATTGTACATTTCAAGTC 1203
|||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1219 TTGTCTAATAACTCCTTGAGCTCTATTTCTGATCTTCTTAAACATTGTACATTTCAAGTC 1278
Query 1204 ACTGGAAAGGGTCAATACAAAGATGAGTTTGTGACAGCAGGAGGAGTTCCTTTATCTGAG 1263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1279 ACTGGAAAGGGTCAATACAAAGATGAGTTTGTGACAGCAGGAGGAGTTCCTTTATCCGAG 1338
Query 1264 GTTTCTTTGAAGACAATGGAGAGCAAATTAGTTCCGAACCTTTTCTTTGCGGGAGAGGTA 1323
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||
Sbjct 1339 GTTTCTTTGAAGACAATGGAGAGCAAATTGGTTCCAAATCTTTTCTTTGCGGGAGAAGTA 1398
Query 1324 CTAAATGTAGATGGAGTTACAGGAGGATTCAATTTCCAGAATGCTTGGTCAGGTGGATAT 1383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1399 CTAAATGTAGATGGAGTTACAGGAGGATTCAATTTCCAGAATGCTTGGTCAGGTGGTTAT 1458
Query 1384 ATCGCAGGCACCAACATCGGCGAATCAGCAAGTAGTAGTAGCAGAAGAAGTTCTAAAGAA 1443
||||||||||| ||||||||||||| |||||||||||| ||||| |||||| ||||||
Sbjct 1459 ATCGCAGGCACAAACATCGGCGAATTAGCAAGTAGTAG---CAGAATAAGTTCGAAAGAA 1515
Query 1444 AGAAAAGT-AGTTATAGGATTGTAGTTTTCTTTATAAGACAAGTACT 1489
|||||||| | | ||||||||||||||| ||| |||||| |||||||
Sbjct 1516 AGAAAAGTTACT-ATAGGATTGTAGTTTGCTT-ATAAGAAAAGTACT 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73443397335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5