BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947807
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39865.1 | Symbols: | Glutaredoxin family protein | chr5:15... 822 0.0
AT3G28850.1 | Symbols: | Glutaredoxin family protein | chr3:10... 285 7e-76
> AT5G39865.1 | Symbols: | Glutaredoxin family protein | chr5:15965461-15967173
REVERSE LENGTH=1713
Length=1713
Score = 822 bits (445), Expect = 0.0
Identities = 520/554 (94%), Gaps = 13/554 (2%)
Strand=Plus/Plus
Query 744 CAAAAGAAAGAGTTTAGGTAAAGAAAAAGTGAG-ACTTTACTTCACAAGCCTTAGAGGTA 802
||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 1092 CAAAAGAAAGACTTTAGGTAAAGAAAGAGTG-GTACTTTACTTCACAAGCCTTAGAGGTA 1150
Query 803 TAAGGAAGACATATGAAGACTGCTGCAATATCCGGATAATACTGAAAAGCTTAGGAATTC 862
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TAAGGAAAACATATGAAGACTGCTGCAATATCCGGATAATACTGAAAAGCTTAGGAATTC 1210
Query 863 GGATCGATGAGCGCGATGTATCAATGCATTCGGGATTCAAAGATGAGCTGAAGAAGCTAT 922
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct 1211 GGATCGATGAGCGCGATGTATCGATGCATTCGGGTTTCAAAGATGAGCTGAAGAAGCTCT 1270
Query 923 TGGAGGAAAAATTTAACAATGGCGTTGGAATAACACTGCCTAGAGTTTTCTTGGGGAACA 982
|||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1271 TGGAGGGTAAATTCAACAACGGCGTTGGAATAACCCTGCCTAGAGTTTTCTTGGGGAACA 1330
Query 983 AGTATCTTGGCGGAGTGGAGGAGATTAAGAAGTTGAATGAAAAT-GGGACACTTGAAAAG 1041
|||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 1331 AGTATCTTGGCGGAGTAGAGGAGATTAAGAAGTTGAATGAAAATGGGGA-ACTTGAAAAG 1389
Query 1042 CTGATAAAAGACTGCGAAATGGTTGAAGATGGCTTAACGGGTTTTGGTAACGAATGTGAG 1101
|||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1390 CTGATAAAAGACTGTGAAATGGTTGAAGATGGCTCACCGGGTTTTGGTAACGAATGTGAG 1449
Query 1102 GCTTGTGGAGATGTTCGGTTTGTGCCGTGTGAGACATGTTCAGGCAGCTGCAAAATTTAC 1161
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1450 GCTTGTGGAGATGTTCGGTTTGTGCCGTGTGAGACATGTTCAGGCAGCTGCAAACTTTAC 1509
Query 1162 CATGAAGGCgaagaagaagaagaagaagaagaagaagTTACGGACTATGGATTTCAAAGA 1221
|| ||||||||||||||||| |||| || | |||| || |||||||||||||||
Sbjct 1510 CACGAAGGCGAAGAAGAAGACGAAG--GA-G------TTACAGAGTATGGATTTCAAAGA 1560
Query 1222 TGTCCATATTGTAATGAGAATGGATTGATCAGATGTCCTGTGTGTTGTGAGTGAGTCAAT 1281
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1561 TGTCCATATTGTAATGAGAATGGATTGATCAGATGTCATGTGTGTTGTGAGTGAGTCAAT 1620
Query 1282 ATACAAAACTCAGT 1295
||||||||||||||
Sbjct 1621 ATACAAAACTCAGT 1634
Score = 553 bits (299), Expect = 2e-156
Identities = 324/336 (96%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 2 TTGCTCTGTTTTCGACTTG-GTTGATTAAAATGGGTTGTGCGAGCTCGAAGAATCGGAAT 60
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 412 TTGCTCTGTTTTCGATTTGATTTGATTAAAATGGGTTGTGCGAGCTCGAAGAATCGAAAC 471
Query 61 CGTTGCCGTAATTGCAAAGGAGGATTATCGCCGGTGATTGTGCCACGAAGCTATTCAATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CGTTGCCGTAATTGCAAAGGAGGATTATCGCCGGTGATTGTGCCACGAAGCTATTCAATG 531
Query 121 CACGTTCATCATCCAGCACAACACACCGGCGATAGTTATCACACTGTGGCTCTCACTTCC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 532 CACGTTCATCATCCAGCACAACACACCGGCGATAGTTATCACACGGTGGCTCTCACTTCC 591
Query 181 TCCACAATTGGATCTCTTAGTCTTTGTGATTCTTCTCTCAGGCATTTTCACAAACACTTG 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TCCACAATCGGATCTCTTAGTCTTTGTGATTCTTCTCTCAGGCATTTTCACAAACACTTG 651
Query 241 GAAGACTCTATTTACAAGCAACGGGTTTCCGATCAAATGGGTGAGGAGAAGCTAATCTCC 300
||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||
Sbjct 652 GAAGACTCTTTTTACAAGCAACGCGTTTCCGACCAAATGGGTGAGGAGACGCTAATCTCC 711
Query 301 GGTAATGGGTTTCTTCACGGCGATGAAGAGAATGAT 336
|||||||||||||||||||||||||||||||| |||
Sbjct 712 GGTAATGGGTTTCTTCACGGCGATGAAGAGAA-GAT 746
Score = 508 bits (275), Expect = 4e-143
Identities = 325/350 (93%), Gaps = 0/350 (0%)
Strand=Plus/Plus
Query 360 AGAGAAGATGAATTTGGATTTGCAAGCTAAGGTTATTGAAGCTAGGGTTTGGTCAAGTAT 419
|||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||
Sbjct 738 AGAGAAGATGAATTTGGATTTGCAAGCTAAGGTTATCGAAGCTAAGGTGTGGTCAAGTAC 797
Query 420 GATAAACGAGAAAATCCCTAAGATTGTGCCTAAAACTCCAATAGTGACACCTCCTGGAGA 479
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 798 GATAAACGAGAAAATCCCTAAGATTGTGGCTAAAACTCCAATAGTGACGCCTCCTGGAGA 857
Query 480 GCCAGAGACGATCAATACGTGGGAATTGATGGAAGGTCTTGAAGATGTTAGTCCTTTACG 539
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 858 GCCAGAGACGATCAATACATGGGAATTGATGGAAGGTCTTGAAGATGTTAGTCCTTTACG 917
Query 540 ATCACCGAATCACTCGAGAAGCTTCTCGTTTGATGTTGTTCGTATCCAACCTAATCATGA 599
|||||||||||||| ||| |||||||| |||||| |||||||||||||||||| ||||||
Sbjct 918 ATCACCGAATCACTTGAGGAGCTTCTCCTTTGATTTTGTTCGTATCCAACCTAGTCATGA 977
Query 600 TGATGATGTTGATGTTGATGTTTCGTTTGATCGTGCTAAATCAAGGTTTCATGAGAATGT 659
| ||||| |||||||| |||||| ||||||| | |||||||||||||||||||||||||
Sbjct 978 TCATGATCATGATGTTGCTGTTTCCTTTGATCTTCCTAAATCAAGGTTTCATGAGAATGT 1037
Query 660 GAAGTCCAATAGCAGAGTTGATGATTTGGAGCCATCTGAGATAGTTTCAA 709
||||||| | ||||||||||||||||||| ||| |||| ||||||||||
Sbjct 1038 TAAGTCCAGTTGCAGAGTTGATGATTTGGATCCACCTGATATAGTTTCAA 1087
> AT3G28850.1 | Symbols: | Glutaredoxin family protein | chr3:10848669-10850122
FORWARD LENGTH=1454
Length=1454
Score = 285 bits (154), Expect = 7e-76
Identities = 349/444 (79%), Gaps = 10/444 (2%)
Strand=Plus/Plus
Query 760 GGTAAAGAAAAAGTGAGACTTTACTTCACAAGCCTTAGAGGTATAAGGAAGACATATGAA 819
|||||||| | ||||| ||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 745 GGTAAAGAGAGAGTGATACTTTACTTTACAAGTCTTAGAGGTATAAGGAAGACTTATGAA 804
Query 820 GACTGCTGCAATATCCGGATAATACTGAAAAGCTTAGGAATTCGGA-TCGATGAGCGCGA 878
|| |||| || | ||| | ||||| |||||| | || ||| || | |||||||| ||
Sbjct 805 GAAAGCTGTGATGTTCGGGTTATACTAAAAAGCCTCGGGATT-AGAGTGGATGAGCGAGA 863
Query 879 TGTATCAATGCATTCGGGATTCAAAGATGAGCTGAAGAAGCTA-TTGGAGGAAAAATTTA 937
||| || ||||||||||| |||||||| ||| ||||| ||||| | || |||||| ||||
Sbjct 864 TGTGTCGATGCATTCGGGTTTCAAAGACGAGTTGAAGGAGCTACTAGG-GGAAAAGTTTA 922
Query 938 ACAATGGCGTTGGAATAACACTGCCTAGAGTTTTCTTGGGGAA-CAAGTATCTTGGCGGA 996
|||| || ||||| || || | |||||||||||||| ||||| |||||| |||| |||
Sbjct 923 ACAAAGGTGTTGGGATTACTTTACCTAGAGTTTTCTT-GGGAAGGAAGTATATTGGGGGA 981
Query 997 GTGGAGGAGATTAAGAAGTTGAATGAAAATGGGACA-CTTGAAAAGCTGATAAAAGACTG 1055
| ||||||||| |||||| || ||| |||||| | ||||| ||||| | || ||
Sbjct 982 GCAGAGGAGATTCGGAAGTTAAACGAAGATGGGA-AGCTTGAGAAGCTTCTTGGAGGGTG 1040
Query 1056 CGAAATGGTTGAAGATGGCTTAACGGGTTTTGGT-AACGAATGTGAGGCTTGTGGAGATG 1114
|| | ||| ||||| | || ||| |||| | |||||||| |||||||||||||
Sbjct 1041 TGAGAGGGTGGAAGAAAACCAAAATGGTAATGGTCTA-GAATGTGAAGCTTGTGGAGATG 1099
Query 1115 TTCGGTTTGTGCCGTGTGAGACATGTTCAGGCAGCTGCAAAATTTACCATGAAGGCgaag 1174
| |||||||||||||||||||||||||||| ||||||||| | ||| ||||| ||||
Sbjct 1100 TAAGGTTTGTGCCGTGTGAGACATGTTCAGGGAGCTGCAAAGTGTACTATGAATATGAAG 1159
Query 1175 aagaagaagaagaagaagaagaag 1198
| || || || || || || ||||
Sbjct 1160 ATGATGATGATGATGATGATGAAG 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5