BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg947809

Length=333
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG00700.1 | Symbols: PSBN | photosystem II reaction center pr...   243    1e-63
  ATCG00150.1 | Symbols: ATPI | ATPase, F0 complex, subunit A pro...   124    4e-28


> ATCG00700.1 | Symbols: PSBN | photosystem II reaction center 
protein N | chrC:74249-74380 REVERSE LENGTH=132
Length=132

 Score =  243 bits (131),  Expect = 1e-63
 Identities = 131/131 (100%), Gaps = 0/131 (0%)
 Strand=Plus/Plus

Query  110  ATGGAAACAGCAACCCTAGTCGCCATCTTTATATCTGGGTTACTTGTAAGTTTTACTGGG  169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGAAACAGCAACCCTAGTCGCCATCTTTATATCTGGGTTACTTGTAAGTTTTACTGGG  60

Query  170  TATGCTCTATATACTGCCTTTGGGCAACCCTCTCAACAACTAAGAGATCCATTCGAGGAA  229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TATGCTCTATATACTGCCTTTGGGCAACCCTCTCAACAACTAAGAGATCCATTCGAGGAA  120

Query  230  CACGGGGACTA  240
            |||||||||||
Sbjct  121  CACGGGGACTA  131


> ATCG00150.1 | Symbols: ATPI | ATPase, F0 complex, subunit A protein 
| chrC:14021-14770 REVERSE LENGTH=750
Length=750

 Score =  124 bits (67),  Expect = 4e-28
 Identities = 71/73 (97%), Gaps = 0/73 (0%)
 Strand=Plus/Plus

Query  241  CGGGATTCAAGCTCTCATTTTTGCCACTTTAGTTGCGGCTTATATATGTGAGTCTATGGA  300
            |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct  678  CGGGATTCAAGCTCTCATTTTTGCCACTTTAGCTGCGGCTTATATAGGTGAGTCTATGGA  737

Query  301  AGGTCATCATTAA  313
            |||||||||||||
Sbjct  738  AGGTCATCATTAA  750



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15532734441


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5