BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg947815
Length=711
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01010.1 | Symbols: NDHF | NADH-Ubiquinone oxidoreductase (c... 1229 0.0
AT2G07600.1 | Symbols: | pseudogene, NADH dehydrogenase, blas... 527 6e-149
> ATCG01010.1 | Symbols: NDHF | NADH-Ubiquinone oxidoreductase
(complex I), chain 5 protein | chrC:110398-112638 REVERSE LENGTH=2241
Length=2241
Score = 1229 bits (665), Expect = 0.0
Identities = 680/687 (99%), Gaps = 1/687 (0%)
Strand=Plus/Plus
Query 26 ATGGAACATACATATCAATATTCATGGATCATCCCTTTCATTCCACTTCCAGTACCTATT 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAACATACATATCAATATTCATGGATCATCCCTTTCATTCCACTTCCAGTACCTATT 60
Query 86 TTACTAGGAGTTGGACTTCTCCTTTTTCCGACAGCAACAAAAAACCTTCGACGCATGTGG 145
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 TTACTAGGAGTTGGACTTCTCCTTTTTCCGACAGCAACAAAAAACCTTCGCCGCATGTGG 120
Query 146 ACTTTTCTTAGTAtttttttGTTAAGTATAGTTATGATCTTTTCACTCTATCTATCTATT 205
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ACTTTTCTTAGTATTTTTTTGTTAAGTATAGTTATGATCTTTTCAATCTATCTATCTATT 180
Query 206 CAACAAATTTTTCTAAGTTGCATTCATCAAAATGTATGGTCTTGGACCATAAATAATGAA 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAACAAATTTTTCTAAGTTGCATTCATCAAAATGTATGGTCTTGGACCATAAATAATGAA 240
Query 266 TTTTCTTTTGAGTTCGGTTACTTTATCGATCCACTTACTTCTATTATGTCAATATTAATA 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTTCTTTTGAGTTCGGTTACTTTATCGATCCACTTACTTCTATTATGTCAATATTAATT 300
Query 326 ACAACTGTTGGGATTTTGGTTCTGATTTATAGTGACAATTATATGTCGCATGATCAAGGA 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACAACTGTTGGGATTTTGGTTCTGATTTATAGTGACAATTATATGTCGCATGATCAAGGA 360
Query 386 TATCTGAGATTTTTTGCTTATATGGGtttttttAATACTTCAATGTTAGGATTAGTTACT 445
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACCTGAGATTTTTTGCTTATATGGGTTTTTTTAATACTTCAATGTTAGGATTAGTTACT 420
Query 446 AGTTCTAATTTGATCCAAGTTTAttttttttGGGAATTAGTTGGAATGTGTTCATATTTA 505
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 AGTTCTAATTTGATCCAAGTTTATTTTTTTTGGGAATTAGTTGGAATGTGTTCGTATTTA 480
Query 506 TTAATAGGTTTTTGGTTCACACGACCTATTGCAGCGAATGCTTGTCAAAAAGCTTTTGTA 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTAATAGGTTTTTGGTTCACACGACCTATTGCAGCGAATGCTTGTCAAAAAGCTTTTGTA 540
Query 566 ACTAATCGTGTAGGGGATTTTGGTTTATTATTAGGAATTTTAGGTCTTTATTGGATAACA 625
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ACTAATCGTGTAGGGGATTTTGGTTTATTATTAGGAATTTTAGGTCTTTATTGGATAACT 600
Query 626 GGCAGTTTTGAATTTCAGGATTTGTTCGAAATATTCAATAATTTAATTT-AAATAATAGA 684
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 601 GGCAGTTTTGAATTTCAGGATTTGTTCGAAATATTCAATAATTTAATTTTAAATAATAGA 660
Query 685 GTAAATCTCTTATTCCTTACTTTGTGT 711
|||||||||||||||||||||||||||
Sbjct 661 GTAAATCTCTTATTCCTTACTTTGTGT 687
> AT2G07600.1 | Symbols: | pseudogene, NADH dehydrogenase, blastp
match of 71% identity and 8.1e-159 P-value to GP|17932795|emb|CAC85134.1||AJ312951
NADH dehydrogenase subunit F {Cassinopsis
ilicifolia} | chr2:3188396-3190016 REVERSE LENGTH=1621
Length=1621
Score = 527 bits (285), Expect = 6e-149
Identities = 338/363 (93%), Gaps = 6/363 (2%)
Strand=Plus/Plus
Query 350 ATTTATAGTGACAATTATATGTCGCATGATCAAGGATATCTGAGA-TTTTTTGCTTATAT 408
|||||||||||| |||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 64 ATTTATAGTGACCATTATATGTCGCATGATCAAGGATATCTAATATTTTTTTGCTTATAT 123
Query 409 GGGtttttttAATACTTCAATGTTAGGATTAGTTACTAGTTCTAATTTGATCCAAGTTTA 468
|||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||
Sbjct 124 GGGTTTTTTTAATACTCCAATGTTAGG-TTAGGTACTAGTTCTAATTTGTTCCAAGTTTA 182
Query 469 ttttttttGGGAATTAGTTGGAATG-TGTTCATATTTATTAATAGGTTTTTGGTTCACAC 527
|||| || ||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 183 TTTTCTTGGGGAATTAGTTGGAATGTTG-T-GTATTTATTAATAGGTTTTTGGTTCACAC 240
Query 528 GACCTATTGCAGCGAATGCTTGTCAAAAAGCTTTTGTAACTAATCGTGTAGGGGATTTTG 587
|||||||||||| ||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 241 GACCTATTGCAGTGAATGCTTGTCGAAAAGCTTTGGTAACTAATCGTGTAGGAGATTTTG 300
Query 588 GTTTATTATTAGGAATTTTAGGTCTTTATTGGATAACAGGCAGTTTTGAATTTCAGGATT 647
|||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 301 GTTTATTATTAGAAATTTTAGGTCTTTATTGGATAATGGGCAGTTTTGAATCTCAGGATT 360
Query 648 TGTTCGAAATATTCAATAATTTAATTT-AAATAATAGAGTAAATCTCTTATTCCTTACTT 706
|||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 361 TGTTTGAAATATTCAATAATTTAATTTTAAATAATAGAGTAAATCTCTTATTCTTTACTT 420
Query 707 TGT 709
|||
Sbjct 421 TGT 423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34460624842
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5